Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00640 ATGTCCACAACCACCGCATCCGGCGACGGCGCTCCATCTCTCCACTTCGATACGCCGACGCTGGACCGGGAGTTCGCGGCGCTTCTCCACTCGATTTCCGAGCACGGCGGGTACGCTTACGTGAGCATGGCGGCGCTGGCGTCCGGCGGCGACATTCGCGCGGCGGAGGCGGCGCGTGAGATGGCGTGGGAGCAGCTTCACTCCGGGCCGTGGCACTCGGTGCTGCCGGTGTGGCGCGACGCGTACTCCATGGCGTGCCTCCACGTGGCGCGACACCACTACGGAAACGGCGAGTTCAGGGAGGCGCTTAGGGTTTTAGATTTGGGAATCATCATGGGAGGAACGCTCCTCCGCAAGGATTTGGACTCCGCCGTCTCGAAAGTGTCGGAACAAACCCGAAGGAGCGTTAGGGTTTCTGATTTGGGGGACTCGGAGCACCGGCTCGTCGATCGGGAATTTGATGTGGCGGAGGTGGTCCAACTTTTACCAATGAAGTCTCTTTCTTCTAAGCTTGTGGTGAAGAAATCAGCGCTGTCGTTGGATAAATTCCTGGAGGATCATTACCTGTCTCGCTCTCCGGTTATTATCAGCGACTGTATGGCTCACTGGCCAGCCAAGGCGAAATGGAATGATGAAGATTACTTGTTGAGAGTTGCCGGTGACCGCACAGTTCCGGTTGAGGTTGGGAAAAACTATTTATGTGCTGAGTGGAAGCAAGAGCTCATTACTTTTTCAGAATTTATTCAGCGGATAAAGTCTGACGCCTGTTCTCCTGGTGGTCCAACATATCTTGCTCAGCATCCATTATTTGATCAGATAAATGAGCTGCGGAGAGATATTTTTATTCCTGACTATTGTTTTGCTGGCGGAGGGGAGCTACGATCTCTCAATGCTTGGTTTGGTCCAGCAGGAACAGTAACACCATTACACCATGATCCGCATCATAACATACTAGCTCAGGTTGTTGGAAAAAAATACATTAGGCTTTACTCGTCATCTTTGTCTGAGGAACTTTCCCCCCACTCTGGTACCATGCTCAGCAATTCCAGCCAGGTTGATTTAGATGACGTAGATGAAACGAAGTTTCCCAAGGTGCAAGAGTTGGAATTTGTAGACTGTATTTTAGAGGAAGGCGAAATGTTATATATCCCGCCAAAATGGTGGCACTATGTGCGGTCTTTGACTACGAGTTTTTCAGTTAGCTTTTGGTGGAGTGAGGGTGACAGTTCTGATGCATCCTAA 1242 0.5161 MSTTTASGDGAPSLHFDTPTLDREFAALLHSISEHGGYAYVSMAALASGGDIRAAEAAREMAWEQLHSGPWHSVLPVWRDAYSMACLHVARHHYGNGEFREALRVLDLGIIMGGTLLRKDLDSAVSKVSEQTRRSVRVSDLGDSEHRLVDREFDVAEVVQLLPMKSLSSKLVVKKSALSLDKFLEDHYLSRSPVIISDCMAHWPAKAKWNDEDYLLRVAGDRTVPVEVGKNYLCAEWKQELITFSEFIQRIKSDACSPGGPTYLAQHPLFDQINELRRDIFIPDYCFAGGGELRSLNAWFGPAGTVTPLHHDPHHNILAQVVGKKYIRLYSSSLSEELSPHSGTMLSNSSQVDLDDVDETKFPKVQELEFVDCILEEGEMLYIPPKWWHYVRSLTTSFSVSFWWSEGDSSDAS 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00640 413 Pfam Cupin-like domain 182 406 IPR041667 -
Phco9g00640 413 PANTHER HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED 80 408 - -
Phco9g00640 413 SMART cupin_9 262 412 IPR003347 -
Phco9g00640 413 Gene3D Cupin 171 405 - -
Phco9g00640 413 ProSiteProfiles JmjC domain profile. 256 413 IPR003347 -
Phco9g00640 413 SUPERFAMILY Clavaminate synthase-like 177 405 - -
Phco9g00640 413 FunFam lysine-specific demethylase JMJ30 171 404 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco9g00640 Cupin_8 7.8e-47 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00640 9 4693798 4697758 Phco9g00640 9 4693798 4697758 ECH