Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00622 | ATGGGAAGTTGCATTTCAACGCAAGGCGTGAGGACACGCAAGAGGGTGAAGCACACAAGCAAGCCCTCGTCGCCGCGAGGGCAAGGGCATGGGCACGAGCAGACGCGGAGGTCGAGCGTGGTGGCTCCTAGGTCGAGCGTGACGGCGCGTCCGCTGAACGTGGTGACGAACGCGAGTCCAGGGAACATATTCGATAAGTACCAGTTCGGGAAGGAGCTGGGGCGCGGCGAGTTCGGCGTGACTCACCGTGTGGTGGATTTGGTGAGTGGCGAAGCGTTTGCGTGCAAGAAGATAGCGAAGACGAAGCTGAGGACGGAGATTGATGTGGAAGATGTGAAGAGAGAGGTGCAGATCATGAGGCACTTGCCTCGGCACCCCAACATTGTGGCCTTCAAGGAGGCTTATGAGGACAGAGACGCTGTGTACCTCGTCATGGAACTCTGTGAAGGTGGTGAACTCTTTGATAGGATTGTTGCTAAGGGCCATTACACCGAGCGTGCTGCTGCTGATGTTGCCAAGACCATACTTGAAGTTTGCAAGGTGTGTCATGAGCACGGAGTAATACATAGGGACCTGAAACCTGAAAACTTCTTATTTGCAGATGCAAGCGAGACTGCTGCATTGAAGTCAATTGATTTTGGCCTTTCCACCTTCTATGTGCCAGGTGAAAAATTCAGTGAAATTGTTGGAAGTCCTTATTACATGGCTCCCGAGGTTTTAAGACGTAACTATGGACAAGAAATTGATGTCTGGAGCACAGGCGTAATTCTTTATATTTTACTTTGTGGAGTTCCACCCTTTTGGGCAGAATCTGAGGAAGGGATTGCACAGGCGATCATCAAGGGTAAAGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCTGATGAAGCAAAACAACTAGTTAAGCGCATGCTTGATCCAAGCCCATTCACCCGGATAACAGTTCAAGAAGTTCTTGACAATACCTGGATACAAAATAGGGAGCATGGTCGAACTATTTCTCTTGGAGACCAAGTGAGAATGAGGATCAAGCAATTCTCCTTGATGAATAGATTCAAAAGAAAGGTTCTTAGAGTGGTAGCAGATAACCTATCAGATGAGCAACTTGCTATGTTTAAGAAAATGTTCGATATGATGGATAAGGACAAAAATGGAAATTTGTCATTTGAAGAGCTCAAAGATGGCCTTTCAATGATTGGACACGCCATTCCTGATCCTGATGTCCAAATCTTAATGGAAGCTGCGGATATTGATGGAAACGGCACCCTTAACTATGATGAGTTTATCACAATGAGTGTTCACCTGAAAAAGATCGAAGGTGATGAGCATCTCTCTCAAGCATTCCGTTACTTTGACAAGAATCAGACCGGGTATGTTGAGTTTGAGGAGTTGAAAGATGCCTTATCAGATGATGACTCGGAAGTCACGAACGACCAAGTGATCAAAGACATTCTAAATGATGTTGACTTGGATAAGGATGGTCGAATCAGTTTTGGGGAGTTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCCTCTCGGCAGTATTCAAGAGCATTGCTGAATGCATTAAGCTTCAAGTTGTTTAAAGACACACCTATGAAAGTGTAA | 1620 | 0.4605 | MGSCISTQGVRTRKRVKHTSKPSSPRGQGHGHEQTRRSSVVAPRSSVTARPLNVVTNASPGNIFDKYQFGKELGRGEFGVTHRVVDLVSGEAFACKKIAKTKLRTEIDVEDVKREVQIMRHLPRHPNIVAFKEAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAADVAKTILEVCKVCHEHGVIHRDLKPENFLFADASETAALKSIDFGLSTFYVPGEKFSEIVGSPYYMAPEVLRRNYGQEIDVWSTGVILYILLCGVPPFWAESEEGIAQAIIKGKVDFTRDPWPKVSDEAKQLVKRMLDPSPFTRITVQEVLDNTWIQNREHGRTISLGDQVRMRIKQFSLMNRFKRKVLRVVADNLSDEQLAMFKKMFDMMDKDKNGNLSFEELKDGLSMIGHAIPDPDVQILMEAADIDGNGTLNYDEFITMSVHLKKIEGDEHLSQAFRYFDKNQTGYVEFEELKDALSDDDSEVTNDQVIKDILNDVDLDKDGRISFGEFKAMMKTGGDWKMASRQYSRALLNALSFKLFKDTPMKV | 539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00622 | 539 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 440 | 475 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | CDD | EFh | 444 | 507 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 60 | 499 | - | - | |
| Phco9g00622 | 539 | Pfam | EF-hand domain pair | 385 | 435 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 368 | 403 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | Pfam | Protein kinase domain | 67 | 325 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco9g00622 | 539 | SUPERFAMILY | EF-hand | 362 | 512 | IPR011992 | - | |
| Phco9g00622 | 539 | Gene3D | Transferase(Phosphotransferase) domain 1 | 153 | 333 | - | - | |
| Phco9g00622 | 539 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 477 | 512 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
| Phco9g00622 | 539 | ProSiteProfiles | Protein kinase domain profile. | 67 | 325 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco9g00622 | 539 | Pfam | EF-hand domain pair | 443 | 507 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | SUPERFAMILY | Protein kinase-like (PK-like) | 51 | 333 | IPR011009 | - | |
| Phco9g00622 | 539 | FunFam | Calcium-dependent protein kinase 1 | 69 | 152 | - | - | |
| Phco9g00622 | 539 | ProSitePatterns | Protein kinases ATP-binding region signature. | 73 | 96 | IPR017441 | GO:0005524 | |
| Phco9g00622 | 539 | ProSitePatterns | EF-hand calcium-binding domain. | 453 | 465 | IPR018247 | - | |
| Phco9g00622 | 539 | ProSitePatterns | EF-hand calcium-binding domain. | 490 | 502 | IPR018247 | - | |
| Phco9g00622 | 539 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 404 | 439 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | MobiDBLite | consensus disorder prediction | 22 | 46 | - | - | |
| Phco9g00622 | 539 | Gene3D | - | 334 | 509 | - | - | |
| Phco9g00622 | 539 | SMART | serkin_6 | 67 | 325 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco9g00622 | 539 | ProSitePatterns | EF-hand calcium-binding domain. | 417 | 429 | IPR018247 | - | |
| Phco9g00622 | 539 | FunFam | calcium-dependent protein kinase 13 | 153 | 333 | - | - | |
| Phco9g00622 | 539 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 187 | 199 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco9g00622 | 539 | CDD | STKc_CAMK | 66 | 324 | - | - | |
| Phco9g00622 | 539 | Gene3D | Phosphorylase Kinase; domain 1 | 69 | 152 | - | - | |
| Phco9g00622 | 539 | CDD | EFh | 372 | 432 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | ProSitePatterns | EF-hand calcium-binding domain. | 381 | 393 | IPR018247 | - | |
| Phco9g00622 | 539 | SMART | efh_1 | 444 | 472 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | SMART | efh_1 | 372 | 400 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | SMART | efh_1 | 408 | 436 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | SMART | efh_1 | 481 | 509 | IPR002048 | GO:0005509 | |
| Phco9g00622 | 539 | FunFam | Calcium-dependent protein kinase 7 | 334 | 510 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00622 | Phco-Chr9 | 4531782 | 4535344 | Dispersed/Transposed |
Transcription factors information