Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00610 ATGGGACACAGTTCGAAGAAGAAGAAGCGCGGTGGCGGGAGCGGTCGCCGGAGCAAGGGGAGAACGCAGTCCAAAGATCACGCTTCTCAATTTGGCGCCGAGGATTACGACCATCTCTCCGAAGAGATGACTGCACTATGTGCTATATTCCAAGAAGACTGCAAAATTCTTCCAGGATCGCCTCCTCGTATAGTTGTTAAGCTCAGGCCCTACTCAAAGGACATGGGTTATGAGGACCTAGATGTTTCTGCTGCTCTTGTTGTCAGGTGCTTGCCTGGGTATCCTTTCAAGTGCCCCAAGCTGCAGATTATACCGGAGAAAGGGTTATCCGAAGCTGATGCTGATAAGCTTTTGTCTCTCCTCCATGATCAGGCTACTTTAAATGCTAGGGAAGGACGAGTAATGATCTATAATTTGGTTGAGGCTGCTCAAGAATTTCTTTCTGGTATTGAGCCAATTGCCATATCAAATGATTCTAAGCTTCTACACTCAACTATGGAAAGCAATGAAGAATTGTTTACCAAGGATAAGACATCTTTAAGTAAGAAAGGTTCTTTTGTTTATGGTTTTATAGATCTTTTCAGTGGCTATGGAGAAACATGGAGTTGGGGTTTTGGAATGGATGAAACTGCCGGAAAAAGTTCTTCTCTTCCCTCGTCTAAGTTAGATGCCTCAAAACAACTCTTTGAGGCTCGTGAGAAGAAATCTAATAGCAAGGAAACACTGTTAGTTATGCAAGAACTTCCTGCCAAATTAGATACTGTCGGGGAAGTTATTGAAGACAGCAAGAATAGTTTATCTTTGACTAGTTCAAGTACATCTTCAGCAGATGATTTTGTAGGGAACGACAATGAAGGTGAGAAAGAGTATTTTATTGTTGATGAGTATGCAATTGAAGATAATGAAGGTATCAATGAAAGTGAGTCTTCGGAGGCTGTGCCTTCTGACTCATTGCCTCATCTTCAGCCATCTCAAACAGTAGAAAAGGATATAATGATGGTTCACATGCTTCGCCTTGTTTGTGCTTCTAAAGGATCATTGGCTGACTGTTTGCCACAAGTGGTAACAGAGTTGTACAATTTAGGGATCATTTCTGATTTAGCACGCGACATGGCATCTAAACCACCTTCCATTTTCAACAAAACCTTTGATCGTGTTTTCCAGAAACACCTGGCTTCATCCGTAATATCTCAATTTTGGAAGCCTGATCTTGGAGGCTCAAACACAGTTCCCCACAGTTCTCGATATTTGAATGATTTTGAGGAGCTGCGTTCTCTTGGTCAAGGTGGTTTTGGTCATGTTGTATTGTGCAAAAATAAACTTGATGGAAGGCAATATGCAGTAAAGAAAATTCGCCTTAAGGACAAAAGCATGCCTGACCGAATATTAAGGGAAGTAGCTACACTTTCTCGTTTACAGCATCAACATGTTGTTCGGTATTATCAGGCATGGTTTGAAACTGGAGTTTCTGATTCTTATGGTGATTCAGCTTGGGGTTCAAAGACTACTGTGAGCTCTACTTTCAGCTTTATGGCCGCAACTTCCAATGATATCTTTGGGCATGAAAATCAGCTTGAATCAACTTACCTTTATATACAAATGGAATACTGTCCCAGGACTCTTCGCCAGGTGTTTGAATCATATAATCATTTTGACAAAGAACTGGCTTGGCATTTGTTTCGTCAAATAGTGGAAGGCTTGGCACACATACATGGACAAGGAATAATTCATCGGGACTTAACACCAAATAACATATTCTTTGATGCTCGCAATGATATTAAAATTGGTGATTTTGGTCTTGCCAAGTTCTTGAAGTTAGAGCAGCTGGATCAAGATCTGGGCCACCCTGCTGATGCAACTGGAGTTTCCATTGATGGCACTGGACAAGTGGGGACATATTTCTATACAGCTCCGGAAATTGAGCAAGGATGGCCCAAGATTGATGAAAAGGCTGATATGTACAGCTTAGGAGTGGTTTTCTTTGAGCTTTGGCACCCATTTGGGACAGCAATGGAGAGACATGTTGTTTTATCTGATTTGAAACAGAAAGGTGAAGTTCCACCAATTTGGGTTGCTGAGTTTCCAGAACAGGAATCCTTACTGAGGCAGTTAATGTCTCTGGCTCCTTCAGATCGCCCTTCTGCCACAGAACTTCTGCAAAATGCATTCCCTCAGCGAATGGAGTCTGAATTATTGGATGATATCCTGAGAACAATGCAGAAATCAGAAGATACAAGCATATATGATAAAGTTTTAAGTGCTATCTTTGACAAAGAAATGCTAAGCACAAAACACATTCGTCAGGTTGGTAGATTGGGGTCAGTTGGAGACAGCAGTTCACCCATTCAGTACACAGAATTCGAAACAGAGGTTCGGGATTATGTTGTAGATACAAACAGGGAAATTTTCAGACAGCATTGTGCAAAGCACCTAGAAATATCAACAATGAGATTATTGGAAGATTGTCCGCAGTTTAATAGAAATGCAGTTAAACTTCTGACACATGGAGGAGACATGCTAGAACTTTGCCACGAGTTGCGTTTTCCTTTTGTGAACTGGATTATATCTAACCAGAAATCTTCATTCAAACGATATGAGATATCATTTGTCTTTAGAAGAGCAGTTGGACATTCATCACCAAATCGATATCTTCAGGGAGATTTTGACATTATTGGTGGCACCTCGGCATTGACAGAAGCAGAGGTCATAAAGGTCACAAGGGACGTAGTCACTTGTTTTTTTCATGCAGATTTATGTGACATTCATCTCAACCATGGTGACCTTCTGGATGCAATTTGGTCATGGATTGGAGTCAAGGTAGAACACAGACTCAAAGTAGCAGAGCTTCTTTCAATGATGGGTTCTTTGCGCCCACAATCCTCAGAAAGGAAATCAAAATGGGTCGTGATAAGGCGGCAGCTTTTGCAGGAACTGAATTTAGCAGAGGCTATGGTAAATAGGTTACAGACTGTAGGTTTAAGATTTTGTGGATCTGCAGATCATGCACTCCCTCGATTAAGAGGAGCTCTTCCATCTGATAAACGTACATTCAAGGCACTTGATGAGTTGTCTGAGCTTGTCAGTCTCCTGAGGATTTGGAGGATTGACAAAAATATATATATAGATGCATTAATGCCACCAACTGAAAGTTATCATAGAGATTTGTTTTTTCAGGTATACTTGAGGAAGGAGAACGGTCCTGGATCTCTCTCTGAAGGTGCCTTGCTGGCTGTTGGTGGTCGATATGACTACTTGCTTCATCAGCTGTGGAGAAGTGACTGTAAAGGAAATCCTCCCACTGGAGTGGGGACTAGCCTTGCACTGGAGACAATAATTCAGAATTGTCCTGTAGATATCAAGCCCAATAGAAACGAAGTCAGCACCAATATTCTTGTCTGTTCTAGAGGTGGAGGTGGTCTCCTGGTGGAGCGCATGGAGCTAGTTGCGGAATTATGGGAGGAGAACTTTAAGGCTGAATTCGTTCCTACCCCTGATCCAAGTCTTACAGAGCAGTATGAGTATGCTAATGAACATGGTATCAAATGCCTTGTCATCATCGCAGATACAGATTTCTCCTTGACAGACTCTGTTAAGGTTCGACACCTTGAACTTAAGAGGGAGAAAAGTGTGGAGAGAAAAAGCCTAGTTAAGTTTCTATCGGATGCCATGGCAACACAATTTAGAAATCCCTCCATTTGGATTTGA 3705 0.4184 MGHSSKKKKRGGGSGRRSKGRTQSKDHASQFGAEDYDHLSEEMTALCAIFQEDCKILPGSPPRIVVKLRPYSKDMGYEDLDVSAALVVRCLPGYPFKCPKLQIIPEKGLSEADADKLLSLLHDQATLNAREGRVMIYNLVEAAQEFLSGIEPIAISNDSKLLHSTMESNEELFTKDKTSLSKKGSFVYGFIDLFSGYGETWSWGFGMDETAGKSSSLPSSKLDASKQLFEAREKKSNSKETLLVMQELPAKLDTVGEVIEDSKNSLSLTSSSTSSADDFVGNDNEGEKEYFIVDEYAIEDNEGINESESSEAVPSDSLPHLQPSQTVEKDIMMVHMLRLVCASKGSLADCLPQVVTELYNLGIISDLARDMASKPPSIFNKTFDRVFQKHLASSVISQFWKPDLGGSNTVPHSSRYLNDFEELRSLGQGGFGHVVLCKNKLDGRQYAVKKIRLKDKSMPDRILREVATLSRLQHQHVVRYYQAWFETGVSDSYGDSAWGSKTTVSSTFSFMAATSNDIFGHENQLESTYLYIQMEYCPRTLRQVFESYNHFDKELAWHLFRQIVEGLAHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLAKFLKLEQLDQDLGHPADATGVSIDGTGQVGTYFYTAPEIEQGWPKIDEKADMYSLGVVFFELWHPFGTAMERHVVLSDLKQKGEVPPIWVAEFPEQESLLRQLMSLAPSDRPSATELLQNAFPQRMESELLDDILRTMQKSEDTSIYDKVLSAIFDKEMLSTKHIRQVGRLGSVGDSSSPIQYTEFETEVRDYVVDTNREIFRQHCAKHLEISTMRLLEDCPQFNRNAVKLLTHGGDMLELCHELRFPFVNWIISNQKSSFKRYEISFVFRRAVGHSSPNRYLQGDFDIIGGTSALTEAEVIKVTRDVVTCFFHADLCDIHLNHGDLLDAIWSWIGVKVEHRLKVAELLSMMGSLRPQSSERKSKWVVIRRQLLQELNLAEAMVNRLQTVGLRFCGSADHALPRLRGALPSDKRTFKALDELSELVSLLRIWRIDKNIYIDALMPPTESYHRDLFFQVYLRKENGPGSLSEGALLAVGGRYDYLLHQLWRSDCKGNPPTGVGTSLALETIIQNCPVDIKPNRNEVSTNILVCSRGGGGLLVERMELVAELWEENFKAEFVPTPDPSLTEQYEYANEHGIKCLVIIADTDFSLTDSVKVRHLELKREKSVERKSLVKFLSDAMATQFRNPSIWI 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00610 1234 Gene3D Bira Bifunctional Protein; Domain 2 783 1119 IPR045864 -
Phco9g00610 1234 SUPERFAMILY Class II aaRS ABD-related 1130 1224 - -
Phco9g00610 1234 FunFam eIF-2-alpha kinase GCN2 408 536 - -
Phco9g00610 1234 Coils Coil 971 991 - -
Phco9g00610 1234 SUPERFAMILY Class II aaRS and biotin synthetases 786 1113 IPR045864 -
Phco9g00610 1234 FunFam Histidine--tRNA ligase, cytoplasmic 1125 1224 - -
Phco9g00610 1234 SUPERFAMILY UBC-like 36 147 IPR016135 -
Phco9g00610 1234 MobiDBLite consensus disorder prediction 1 31 - -
Phco9g00610 1234 ProSiteProfiles RWD domain profile. 41 150 IPR006575 GO:0005515
Phco9g00610 1234 SMART RWD2001b 41 150 IPR006575 GO:0005515
Phco9g00610 1234 MobiDBLite consensus disorder prediction 1 16 - -
Phco9g00610 1234 FunFam eIF-2-alpha kinase GCN2 540 733 - -
Phco9g00610 1234 ProSitePatterns Protein kinases ATP-binding region signature. 426 450 IPR017441 GO:0005524
Phco9g00610 1234 FunFam eIF-2-alpha kinase GCN2 30 156 - -
Phco9g00610 1234 Pfam Histidyl-tRNA synthetase 877 1111 IPR041715 -
Phco9g00610 1234 Pfam RWD domain 39 147 IPR006575 GO:0005515
Phco9g00610 1234 Gene3D - 1125 1224 IPR036621 -
Phco9g00610 1234 FunFam eIF-2-alpha kinase GCN2 782 1118 - -
Phco9g00610 1234 Gene3D Transferase(Phosphotransferase) domain 1 539 733 - -
Phco9g00610 1234 PANTHER HISTIDYL-TRNA SYNTHETASE 779 1228 - -
Phco9g00610 1234 Pfam Anticodon binding domain of tRNAs 1129 1226 IPR024435 -
Phco9g00610 1234 Pfam Protein kinase domain 420 722 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00610 1234 CDD STKc_EIF2AK4_GCN2_rpt2 413 720 - -
Phco9g00610 1234 ProSiteProfiles Protein kinase domain profile. 420 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00610 1234 Gene3D Phosphorylase Kinase; domain 1 408 536 - -
Phco9g00610 1234 ProSitePatterns Tyrosine protein kinases specific active-site signature. 575 587 IPR008266 GO:0004672|GO:0006468
Phco9g00610 1234 SUPERFAMILY Protein kinase-like (PK-like) 416 741 IPR011009 -
Phco9g00610 1234 Gene3D Ubiquitin Conjugating Enzyme 29 153 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00610 Phco-Chr9 4421959 4441655 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Phco9g00610 Pkinase 7.9e-50 CL0016