Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00603 ATGTGGTACATTCACAGCCACACGCATGGCAAAGTGACCCCACTCTTCATTATTCTCGAAGAAAGTGAGAGAAGATACACTGCTGGTAAGAACATGAAAATTCAGTGTGATGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAGGCAGTGTTGTGTGCCAAATGTGACGTTGAAGTGCATGCTGCAAACAAGCTTGCAAGCAAGCATCAGAGGCTTCTCCTTCAATGTTTATCAAACAAGCTTCCCAGATGTGACATATGTCAGGACAAGGCAGCTTTCATATTTTGTGTTGAGGATAGAGCACTCTTCTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCAAACCACCAGCGCTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTACTTGCACCAAAGGCAATGAAAAAGGTCACGTGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGACTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAAAGCAGTCCCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGTAGGCCTATTTGGTGAACAGTTCCCTCAGGAGCCTTTAGCCGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACTAGCAATGTTACCTCACAGAAAGCTTCTAAATCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGCCCTGGATGAAGATGATGAGGAACACTTCACTGTTCCTGATCTAGGCTAG 810 0.4543 MWYIHSHTHGKVTPLFIILEESERRYTAGKNMKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALFCKDCDEPIHVAGSLSANHQRFLATGIRVALGSTCTKGNEKGHVEPSNPNAQEVPVKVPSQQVTSFTSSWAVDDLLELTDFESPDKKQSLEFGELEWLADVGLFGEQFPQEPLAAAEVPQLPVTHTSNVTSQKASKSFMSYKKPRIEALDEDDEEHFTVPDLG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00603 269 PANTHER B-BOX ZINC FINGER PROTEIN 22 32 268 - -
Phco9g00603 269 SMART bboxneu5 83 130 IPR000315 GO:0008270
Phco9g00603 269 SMART bboxneu5 31 78 IPR000315 GO:0008270
Phco9g00603 269 CDD Bbox1_BBX-like 88 129 - -
Phco9g00603 269 Pfam B-box zinc finger 34 75 IPR000315 GO:0008270
Phco9g00603 269 Pfam B-box zinc finger 83 126 IPR000315 GO:0008270
Phco9g00603 269 CDD Bbox1_BBX-like 36 78 - -
Phco9g00603 269 ProSiteProfiles Zinc finger B-box type profile. 31 78 IPR000315 GO:0008270
Phco9g00603 269 ProSiteProfiles Zinc finger B-box type profile. 83 130 IPR000315 GO:0008270
Phco9g00603 269 Gene3D Classic Zinc Finger 31 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00603 Phco-Chr9 4372325 4375266 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Phco9g00603 zf-B_box 8.9e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01743 10 39984151 39985906 Phco9g00603 9 4372325 4375266 PCT