Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00598 | ATGCCACTTCCAGCGAAACCAATGAGGGATTCCGACGAGTCCTCGAGCCCTTCCAACAACCTGTGGGTGGGGAATCTGGCGCCGGATGTCACCGACGCCGATCTCATGGAACTTTTCGCCAAATACGGCGCACTCGACAGCGTAACCTCTTATTCCGCTCGCAGTTACGCCTTCGTCTTCTTCAAGCGCGTCGAAGACGCCAAAGCCGCCAAAAACGCTCTCCAAGGAACCTCTCTCCGCGGCAGTTCCTTGAAGATTGAGTTTGCCAGACCGGCAAAGGCAAACAAACAGCTTTGGGTGGGTGGTATTAGCCCAGCTGTTACAAAGGAAGAATTGGAAGCTGAATTTTGTAAAATTGGTAAAATTGAGGATTTTAAGTTCTACAGAGACCGAAATACTGCATGTGTTGAATTTTTCAATTTAGAAGATGCTTCTCAGGCCATGAAAATAATGAATGGGAAAAGAATAGGGGGGGAGCATATTCGTGTTGACTTCCTTCGATCACAAACTACAAAAAGGGATCCGTTGCTTGATTATGGGCAGTTTCAAGGAAAAAGCTTGGGGCCTAGTGATGCTTATTCTGGCCAGAAAAGACCACTGCAGTCACAGCCTCCAATGGGGAGGAAAGGCGATGGTCAACCAAGTAATGTTTTGTGGATTGGTTATCCTCCTGCTGTTCAGATTGATAAACAAATGCTCCACAATGCTATGATTTTATTTGGTGAAATTGAGAGAATCAAGAGTTTTCCCTTGAGGAATTATTCTACAGTAGAGTTTAGAAGTGTTGATGAAGCCCGACGTGCTAAAGAGGGCCTTCAAGGGCGCCTTTTTAATGATCCTCGAATAACAATTATGTATTCTAGCAATGATCTAGTACATGGCAGTGATTACCCTGGCTTTTTTTCTGGAAGTAATGGACCGAGGCCTGATGTATTGCTGAATGAGCATCCATTCCGACCGTTACAGATGGATGCATTTGGTCATAATCGTCCAATTGCTCCAAATAATTTTACTGGTCAGTTACCACCTAGCGGTATTATGGGTCCAAATGTACCAATGCGACCATTTGGTCCTCACAGCGGTGTTGACACTGTTATTTCTGGTCCTGAGTTTAATGAGATTAATGCCCTCCACAAATTTCAGGATGGTAGCTCCAAGAGTAACATGGGTCCAAACTGGAAAAGGCCATCACCTCCTGCACCAGGGATGCTTTCTTCTCCTGCACCAGGTCCTAGGCATCCTACAAGATCAACCTCTGGTGCATGGGATGTACTTGACATAAACCATATTCCAAGAGATTCTAAACGTTCAAGGATTGATGGACCCTTACCTGTTGACGAAGCCCCATTTCCTTTAAGGAATATGGATGATCGGGGGTTAGCCCTGGAGCAATCTTATGGGTTGGATCCATCAATTGATGGAGGTGGTTCTGGTCCCTATGCAAACATTCAAGCAAAGAGTCACCTTGGTCCAATGAACTCAAGGATTACAGCTGGAGTACGTGGTATGGTCCAACCTGATAATGATCATATTTGGCGTGGAATTATTGCAAAAGGCGGAACTCCTGTTTGCCGTGCTAGATGTATACCAATTGGGAAAGGGATTGGGTCTGAGCTTCCTGATGTTATTGATTGCTCAGCTAGGACGGGATTGGATATACTCACTAAACATTATGCTGATGCAATTGGTTTTGATATTGTTTTCTTTCTGCCTGATAGTGAAGATGATTTTGCATCATATACTGAATTCCTTCGCTATCTCAGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGTTGATAACACCACCTTATTCCTGGTGCCTCCTTCTGATTTTCTCACAAGAGTTTTGAAAGTTAGTGGACCTGAGCGATTGTATGGTGTGGTTCTGAAGTTTCCTCAATTGCCAAGTAATGCACCTATGCAACAACCATCCAACTTGCCTGTACCAACAAGTCAGTATATGCAGCAAATTCCTCCTTCACTGACCGAATATGGTTTGATTCCTATGAAAGAGGAACAGGTTTTGTCAATGGATTATAGCAGACCAATGCATGAGGATTCTATGCTTCCTACTAAACCAGTCTACCCACCTACAGGTGGGCCTCCAGTTCATTCTCTGCCTCCAGATTATGCTCCTAATAATGTTGTTGCTGGGTCCCAAGCAGGAGTTGCATTAACGCCTGAGCTGATTGCAACTCTAGCTTCTTTTCTCCCTTCAACTGCACCATTATCTGCCACTGATGGTGCCAAGCCTGGAGTGGGTTCCTCCACCATGAAGCCTCCATTTCCTCCTGTGGCACCAAATGATGGAAGTCAATCCTATTTATGGAAACAGGATAATCAAATTGCTGATCAAACCACTCATCCTCCTCAACAGTTGAGGAGTATTTATAGCCTTCAGAATGCTCACTATCAGCCCTATCCACCAGCATCTGCTCCAGCTGGCAATCCTACTCAAGTGGTCTCTAGTAGTTCTCATATCCAAGATACTGCAGCCAGCATGCATCAGCAAGGTGCTGTTTTATCTAGACACATGCCTAATTTCATGATGCCCACACAAAGCGGACAAGTAGCTGCATCCCCTCATGGCAGTCAGCATTATCAAGTTGAAGTCTCCCCCAGCAATCAGAAAGGCTTTGGAGTTGTGCAGGGAACGGATGCCTCTGTTTTATACAATTCTCAGGCTTTCCAACAACCTGATAACAATTCACTGCCTTTCCAGCAACCTAAGAATTCTATTGCCTTAACTAATCAAGTTAGTGGTGCTAATTCTTCACAGCAGCAGACTGCCATGCCATATACAGTAGACCAAGTAAACCCAGACACCCCCAACCAGCAACTTTCTGTTTTTGGAGTTGGTCAAGGCACACCAGAGGTGGAAGCTGATAAGAACCAGAGATACCAGTCAACATTACAGTTTGCTGCCAATCTTCTTCTCCAAATACAACAGAAGCAACAACAAGCCCCAGGAGGACATGGACCAGGAATTCAATAA | 2997 | 0.4484 | MPLPAKPMRDSDESSSPSNNLWVGNLAPDVTDADLMELFAKYGALDSVTSYSARSYAFVFFKRVEDAKAAKNALQGTSLRGSSLKIEFARPAKANKQLWVGGISPAVTKEELEAEFCKIGKIEDFKFYRDRNTACVEFFNLEDASQAMKIMNGKRIGGEHIRVDFLRSQTTKRDPLLDYGQFQGKSLGPSDAYSGQKRPLQSQPPMGRKGDGQPSNVLWIGYPPAVQIDKQMLHNAMILFGEIERIKSFPLRNYSTVEFRSVDEARRAKEGLQGRLFNDPRITIMYSSNDLVHGSDYPGFFSGSNGPRPDVLLNEHPFRPLQMDAFGHNRPIAPNNFTGQLPPSGIMGPNVPMRPFGPHSGVDTVISGPEFNEINALHKFQDGSSKSNMGPNWKRPSPPAPGMLSSPAPGPRHPTRSTSGAWDVLDINHIPRDSKRSRIDGPLPVDEAPFPLRNMDDRGLALEQSYGLDPSIDGGGSGPYANIQAKSHLGPMNSRITAGVRGMVQPDNDHIWRGIIAKGGTPVCRARCIPIGKGIGSELPDVIDCSARTGLDILTKHYADAIGFDIVFFLPDSEDDFASYTEFLRYLSAKNRAGVAKFVDNTTLFLVPPSDFLTRVLKVSGPERLYGVVLKFPQLPSNAPMQQPSNLPVPTSQYMQQIPPSLTEYGLIPMKEEQVLSMDYSRPMHEDSMLPTKPVYPPTGGPPVHSLPPDYAPNNVVAGSQAGVALTPELIATLASFLPSTAPLSATDGAKPGVGSSTMKPPFPPVAPNDGSQSYLWKQDNQIADQTTHPPQQLRSIYSLQNAHYQPYPPASAPAGNPTQVVSSSSHIQDTAASMHQQGAVLSRHMPNFMMPTQSGQVAASPHGSQHYQVEVSPSNQKGFGVVQGTDASVLYNSQAFQQPDNNSLPFQQPKNSIALTNQVSGANSSQQQTAMPYTVDQVNPDTPNQQLSVFGVGQGTPEVEADKNQRYQSTLQFAANLLLQIQQKQQQAPGGHGPGIQ | 998 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Phco9g00598 | 998 | SUPERFAMILY | RNA-binding domain, RBD | 6 | 93 | IPR035979 | GO:0003676 | |
| Phco9g00598 | 998 | CDD | RRM_SF | 21 | 87 | - | - | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 805 | 824 | - | - | |
| Phco9g00598 | 998 | Gene3D | - | 94 | 174 | IPR012677 | - | |
| Phco9g00598 | 998 | Gene3D | - | 5 | 93 | IPR012677 | - | |
| Phco9g00598 | 998 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 21 | 84 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 228 | 282 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 98 | 161 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 216 | 289 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | SUPERFAMILY | RNA-binding domain, RBD | 96 | 287 | IPR035979 | GO:0003676 | |
| Phco9g00598 | 998 | CDD | SPOC_FPA-like | 511 | 631 | - | - | |
| Phco9g00598 | 998 | PANTHER | RNA RECOGNITION MOTIF-CONTAINING | 8 | 982 | - | - | |
| Phco9g00598 | 998 | FunFam | flowering time control protein FPA | 209 | 304 | - | - | |
| Phco9g00598 | 998 | Pfam | SPOC domain | 506 | 623 | IPR012921 | - | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 433 | 452 | - | - | |
| Phco9g00598 | 998 | FunFam | Flowering time control protein FPA | 11 | 93 | - | - | |
| Phco9g00598 | 998 | SMART | rrm1_1 | 217 | 285 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | SMART | rrm1_1 | 97 | 164 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | SMART | rrm1_1 | 20 | 87 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 187 | 201 | - | - | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 381 | 419 | - | - | |
| Phco9g00598 | 998 | CDD | RRM_SF | 98 | 164 | - | - | |
| Phco9g00598 | 998 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 96 | 168 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 19 | 91 | IPR000504 | GO:0003723 | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 394 | 408 | - | - | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 748 | 774 | - | - | |
| Phco9g00598 | 998 | Gene3D | - | 210 | 298 | IPR012677 | - | |
| Phco9g00598 | 998 | MobiDBLite | consensus disorder prediction | 183 | 214 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00598 | Phco-Chr9 | 4337919 | 4344718 | Dispersed/Transposed |