Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00595 | ATGCGGGAAGTAGCCATTGTGATTTGTGAGGATTTTCTTTTTCTTTTACTAAGTTATTGCTCATATGAAACTACAGAAATTGAAACAGTAGACAGATATAAGGAGAAGTTATCTTTGCATGATTATGGCGATTCCCTTCAAATAACTGCTAAGCGTGACTGTGTCAACCCCAATAAATTTGGTTCAACTCAACACTCTAAGCTGAAATCTGAAGCAACTTTTGTTGCCATTGCAGTGAGGAATGAGATGGCCAATGGCAGCACTACCCACTTCTTCAAGCTCTTCCTTTTCCTTCTGATTCTTCACTCTGCACTTGCTGAGATTTTCTTCGAAGAGAGATTCGAAGATGGATGGAAGAGCCGTTGGGTGTTATCGGACTGGAAAAGGAGTGAGGGAAAAGCAGGTACCTTCAAGCACACAGCAGGGAAATGGTCTGGAGATCCTGATGACAAAGGTCTTCAGACATATAACGATGCCAAGCATTTTGCCATATCTGCGAAGATACCCGAGTTTAACAACAAGGACAGAACCCTTGTGGTGCAGTATTCCATTAGGCTTGAGCAGGACATTGAATGCGGTGGCGGTTACATCAAACTTCTCTCTGGTTATGTCAATCAGAAGAAGTTTGGTGGTGATACCCCTTATAGTTTGATGTTTGGACCAGATATATGTGGTACACAAACTAAGAAGCTCCATCTTATACTATCATATCAGGGGCAGAATTACCCTATTACAAAGGAACTGCAATGTGAAACGGATAAATTGACTCATTTCTATACATTTATTCTAAGGCCTGATGCCTCTTATAGTATCCTTGTTGATAACCGGGAAAGAGATTCGGGAAGCATGTATACAGATTGGGACATCCTTCCTCCAAGGAAAATCAAGGATGTCAAAGCAAAAAAGCCAGCAGACTGGGATGATAGAGAGTACATTGAAGATCCTGATGCGGTCAAACCAGAGGGATATGATTCCATTCCAGCTGAAATTCCTGATCCAAAAGCCAAGAAGCCTGCTGACTGGGATGATGATGACGATGGACTATGGAAGCCCTCAAAGATTCCTAATCCAGCATACAAAGGACCATGGAAACGCAAGAAAATCAAGAATCCCAACTACAAAGGAAAGTGGAAGATTCCATGGATTGATAACCCAGAATTTGAGGATGATCCTGATCTTTATGTTCTCAAGCCAATAAAGTATGTGGGCATTGAAGTGTGGCAGGTGAAGGCAGGTTCAGTTTACGACAACATCTTAATTTGTGATGACCCGCAGTATGCAAAGCAAGCTGTGGATGAATTTATGGCTAATAATAGAGAGGCTGAAAAAGAAGCTTTTGAAGAAGCAGAAAAAGAAAGAAGGGCTCGGGAAGAAGAGGAGGCACAGAGAGCAAGAGAAGAGGGTGAAAAAAGGAGGAAGGAGAGGGATCATAAATATGGAAATAGGAGGCGCCGCCGAAGGCCGGATCCCCACGATACGTATGATTACCATGATGAACTTTGA | 1503 | 0.4238 | MREVAIVICEDFLFLLLSYCSYETTEIETVDRYKEKLSLHDYGDSLQITAKRDCVNPNKFGSTQHSKLKSEATFVAIAVRNEMANGSTTHFFKLFLFLLILHSALAEIFFEERFEDGWKSRWVLSDWKRSEGKAGTFKHTAGKWSGDPDDKGLQTYNDAKHFAISAKIPEFNNKDRTLVVQYSIRLEQDIECGGGYIKLLSGYVNQKKFGGDTPYSLMFGPDICGTQTKKLHLILSYQGQNYPITKELQCETDKLTHFYTFILRPDASYSILVDNRERDSGSMYTDWDILPPRKIKDVKAKKPADWDDREYIEDPDAVKPEGYDSIPAEIPDPKAKKPADWDDDDDGLWKPSKIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPIKYVGIEVWQVKAGSVYDNILICDDPQYAKQAVDEFMANNREAEKEAFEEAEKERRAREEEEAQRAREEGEKRRKERDHKYGNRRRRRRPDPHDTYDYHDEL | 500 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00595 | 500 | Pfam | Calreticulin family | 347 | 420 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | Pfam | Calreticulin family | 111 | 345 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | Gene3D | - | 107 | 463 | - | - | |
| Phco9g00595 | 500 | MobiDBLite | consensus disorder prediction | 330 | 350 | - | - | |
| Phco9g00595 | 500 | MobiDBLite | consensus disorder prediction | 441 | 475 | - | - | |
| Phco9g00595 | 500 | MobiDBLite | consensus disorder prediction | 309 | 353 | - | - | |
| Phco9g00595 | 500 | Gene3D | Calreticulin/calnexin, P domain | 281 | 401 | IPR009033 | GO:0005509|GO:0005515 | |
| Phco9g00595 | 500 | MobiDBLite | consensus disorder prediction | 441 | 500 | - | - | |
| Phco9g00595 | 500 | SUPERFAMILY | P-domain of calnexin/calreticulin | 288 | 403 | IPR009033 | GO:0005509|GO:0005515 | |
| Phco9g00595 | 500 | MobiDBLite | consensus disorder prediction | 486 | 500 | - | - | |
| Phco9g00595 | 500 | PANTHER | CALRETICULIN AND CALNEXIN | 93 | 467 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | ProSitePatterns | Calreticulin family signature 2. | 217 | 225 | IPR018124 | GO:0005509 | |
| Phco9g00595 | 500 | PRINTS | Calreticulin signature | 213 | 229 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | PRINTS | Calreticulin signature | 187 | 205 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | PRINTS | Calreticulin signature | 330 | 352 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | PRINTS | Calreticulin signature | 302 | 315 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | PRINTS | Calreticulin signature | 368 | 387 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | PRINTS | Calreticulin signature | 401 | 421 | IPR001580 | GO:0005509|GO:0005783|GO:0006457|GO:0051082 | |
| Phco9g00595 | 500 | Coils | Coil | 438 | 476 | - | - | |
| Phco9g00595 | 500 | FunFam | Calreticulin | 292 | 393 | - | - | |
| Phco9g00595 | 500 | SUPERFAMILY | Concanavalin A-like lectins/glucanases | 106 | 305 | IPR013320 | - | |
| Phco9g00595 | 500 | FunFam | Calreticulin 1b | 107 | 291 | - | - | |
| Phco9g00595 | 500 | ProSitePatterns | Calreticulin family signature 1. | 185 | 200 | IPR018124 | GO:0005509 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00595 | Phco-Chr9 | 4312496 | 4320133 | Dispersed |