LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco9g00588	ATGGAAGATCATTTTTGCCCTAAGGGGAAGGAAACTGGCTATTGCACCTCTCCTGGGGCCCAGTTGGAGGAATCAACATCGGTTGATGGTGGAATGAAAAAATCTGCTTCAGAAGACATGTTTAGCAACTTCTCTGAGCTCATGAACTTTGATACGTATGCTGGTTGGAGCAATAGCTCATCTATGACTTATCAGAGTTTGGCTAATGTGTTTTCATCATTTTCCTCAGCATCATATCCTCCCTCCGATGGATTGAATTTGGTGGAACATGGCAATGGTCCATGCTTCATGACAGAAGTTAGTGAAATTCAGAATGGTATGGAAAGTTCTCCTAGTTGTGAGGAGAGAGGTATATTTCAGCAAATGGACATCCAACTTGGGTTCTTAGATGAAGCAAATGATTCAAACAGCTTTGATTCAAAACAAAGTCGTAATGGTACATATCAGCAACTTAATACCTCAGACATGTGCAATTACTTAATCTCAAGGTCATCAGGTAGGCCACTTGATGATAGAATATTGAGGGCTTTGTCCTTCTTTATGGAATCAGTTGATGGGGAAATGCTGGCACAAGTTTGGGTACCTATAAAGCATGGTGATGAATTCATCTTAAGCACAAGTGAACAACCTTATTTGTTAGATCCAAAGCTTGCAGGGTATCGAGAGGTGTCAAGGGCATTCACATTTTCTTCAGAAGGAAAGAAAGGATCATGTCCGGGGCTTCCTGCTCGAGTGTTTATATCACATGTTCCTGAATGGACTTCCAATGTTGGCTACTATAATAAAACTGAGTACTTAAGGTTGGACCATGCATTGAATCATGAAATTCGTGGATCTATTGCTCTTCCTATTTCTGATATGCATTCTCAAGTGCCATGTGCTGTATTGGAACTAGTCACTACAAAGGAGAAACCGAATTTTGACAGAGAATTAGAAATTGTTACCCATGCACTCCAGCTTGTAAATTTAAAGACCATTACACCTCCACGACTTCTTCCCCAGAGTCTATCAAGTAACAAAAGAGCTGCTTTAACAGAGATACTTGATGTGTTACGTGCCGTGTGTCATGCACATAGATTGCCATTAGCATTGACATGGATTCCCTGTTGTTACAGTGAGGGAATAAGGGATGAATCTGAGAGAATACAAATCAAAGAAGGTCATACAAGTTCTAATGAAAAATGTGTGTTATGTATTGAGGAATCAGCTTGCTATATAAATGATGGAGCACTAGGAGGATTTGTTCATGCATGCGTTGAACATCATCTTGAGGAAGGGCAAGGTATAGCAGGGAAAGCTCTTCAATCAAATCATCCATTCTTCTATACTGATGTGAAGACATATGATATTGGTGAATACCCCCTTGTTCATCATGCACGCAAATATAACTTGAATGCTGCAGTTGCAATTCGGCTAAGGAGTACCTATACTAATGACGATGATTACATATTAGAATTCTTTCTGCCGGTGACAATGACAGGGAGTTCAGAACAACAACTTTTATTGGATAATCTCTCAGGTACCATGCGTAGAATTTGTAGGAGTTTGAGAACAGTTTCAGATTCTGAGTTAACAGGAATAGAAGGATCCGTAGCTGGGTTTCCTAAGGAAAAAGCCACATATTTTTTTCCCATGTCCAAGAGAAACTCTCAGATAGCATTTATAAATGATGATCATGATTCGGTCCAGAAAATGTCCTTGAAAGCATCTAACAGTGGAATTGAGGCTGTTCATAGCCAGGTAATGAATGGATCAAGAAAACAGATTGAGAAAAAGAGAAGCACAGTGGAGAAGAATGTCAGTTTGAGTGTTCTCCAACAGTACTTTTCTGGTAGTCTGAAAGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTAAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGGAAGATCAATAAAGTGAATCGTTCATTAAAGAAGATACAGACTGTGCTTGATTCTGTCCAGGGAGTGGAAGGAGGGTTGAAGTTTGATCCTTATACTGGGGGGCTTATAGCTGGAGGATCAATAATGCAAGAAATTGACACACATAAATATATTCTGTTTCCTGAGAAAAGTGTTGTGAAAGACCCTAAGCATGCAAGACAAAAATCAGTCTCAGTAGTTTCAGCACCAGGCAGCACTAGTGAGAATTCAACAATTAAGTTGGATGATGATGATGGTGTTTGTTTGGTGGGAAACAAGCTTGTGCATTCAAGAAGTGTACTTATATCTGATACCAGTGAGAGAGGATTGAAAAAAGACAATGCTTCTTCTGATGATTGTTGTGAAGATTCAAAATCAGTGGCCATGAATGATGGATCAAGCCAGAAGGGCAGCAAACGGGTCAAGAATCAGGATTTCCCTGATCAAACTTGTTCAATCTCCTTGGTTACTGAGGAGGTTGAAGTTGGAGTAGATGGGGGAGAGGGAATTAATGAACATAACCACCTTAATTCTTCAAGCACTACACAGTCATCCAATGGCTCTGGCTCAATGATGCATGGCAGCTCATCACGCTCTCAAAGCTTTGAGAACCAAAAGCATTCAAAAGTAAAATCAACTTGTGTTGATAGTGGGTCAAAAATGATTGTGAAAGCTAGCTATAGGGGAGACACTATTCGTTTCAAGTTTGATCCATCCGCAGGTTGTTTCCAGCTATATGATGAAGTTGCAACAAGGTTCAAACTCCAAAACGGGTCATTCCAGCTCAAATATCAAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGCAGGAATGTATAGAAATTTTGGATGACATTGGCACACGTTGTGTGAAGTTTCTGGTTCGTGATGTGCCTTGTGTTTTAAGCAGTCGTGGCAGCAACAATTGCTTCTTCTTGTCAGATAGCTCATAG	2910	0.4024	MEDHFCPKGKETGYCTSPGAQLEESTSVDGGMKKSASEDMFSNFSELMNFDTYAGWSNSSSMTYQSLANVFSSFSSASYPPSDGLNLVEHGNGPCFMTEVSEIQNGMESSPSCEERGIFQQMDIQLGFLDEANDSNSFDSKQSRNGTYQQLNTSDMCNYLISRSSGRPLDDRILRALSFFMESVDGEMLAQVWVPIKHGDEFILSTSEQPYLLDPKLAGYREVSRAFTFSSEGKKGSCPGLPARVFISHVPEWTSNVGYYNKTEYLRLDHALNHEIRGSIALPISDMHSQVPCAVLELVTTKEKPNFDRELEIVTHALQLVNLKTITPPRLLPQSLSSNKRAALTEILDVLRAVCHAHRLPLALTWIPCCYSEGIRDESERIQIKEGHTSSNEKCVLCIEESACYINDGALGGFVHACVEHHLEEGQGIAGKALQSNHPFFYTDVKTYDIGEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYILEFFLPVTMTGSSEQQLLLDNLSGTMRRICRSLRTVSDSELTGIEGSVAGFPKEKATYFFPMSKRNSQIAFINDDHDSVQKMSLKASNSGIEAVHSQVMNGSRKQIEKKRSTVEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPYTGGLIAGGSIMQEIDTHKYILFPEKSVVKDPKHARQKSVSVVSAPGSTSENSTIKLDDDDGVCLVGNKLVHSRSVLISDTSERGLKKDNASSDDCCEDSKSVAMNDGSSQKGSKRVKNQDFPDQTCSISLVTEEVEVGVDGGEGINEHNHLNSSSTTQSSNGSGSMMHGSSSRSQSFENQKHSKVKSTCVDSGSKMIVKASYRGDTIRFKFDPSAGCFQLYDEVATRFKLQNGSFQLKYQDDEEEWVMLVNDSDLQECIEILDDIGTRCVKFLVRDVPCVLSSRGSNNCFFLSDSS	969

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco9g00588	969	MobiDBLite	consensus disorder prediction	814	859	-	-
	Phco9g00588	969	ProSiteProfiles	RWP-RK domain profile.	579	667	IPR003035	-
	Phco9g00588	969	MobiDBLite	consensus disorder prediction	820	859	-	-
	Phco9g00588	969	ProSiteProfiles	PB1 domain profile.	868	950	IPR000270	GO:0005515
	Phco9g00588	969	Pfam	RWP-RK domain	599	647	IPR003035	-
	Phco9g00588	969	Gene3D	-	865	947	-	-
	Phco9g00588	969	SUPERFAMILY	CAD & PB1 domains	863	952	-	-
	Phco9g00588	969	MobiDBLite	consensus disorder prediction	756	793	-	-
	Phco9g00588	969	MobiDBLite	consensus disorder prediction	769	793	-	-
	Phco9g00588	969	SMART	PB1_new	868	950	IPR000270	GO:0005515
	Phco9g00588	969	Pfam	PB1 domain	871	949	IPR000270	GO:0005515
	Phco9g00588	969	PANTHER	PROTEIN NLP8	133	959	IPR045012	GO:0003700

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco9g00588	Phco-Chr9	4267093	4271356	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	RWP-RK	Phco9g00588		PB1	8.2e-18	CL0072