Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00586 ATGGCCGTCGACGATGCCGATCAATCCAACAGGGCTCACAGGAGTCGCCAATCCGGTTCCAAATCCGCCAAGAAGAAGAGTAAGAAGAAGCAGAATCAGGATGACGGAGGAGAGGATCAGAAAAACCAAAACCCTAAGGCATTCGCCTTTTCTTCCTCCAACAAAGCCAAGCGGTTGCAATCACGTACCGTCGAGAAAGAGCAGCGCCGCCTTCACGCTCCCATCATTGACCGCTCCTACGGCGAAGCCGCACCATACGTCGTCGTCGTGCAGGGTCCTCCTCAGGTTGGGAAGTCACTTCTTATTAAATCTTTGGTTAAACATTACACGAAACATAATTTGCCCGATGTTCGAGGTCCAATTACTATTGTGTCAGGAAAGCAAAGGCGGGTGCAGTTTGTGGAATGTCCGAATGATATCAATGGCATGATAGATGCCGCGAAGTTTGCTGATCTAGCGCTTCTTCTCATAGACGGGAGTTATGGTTTTGAAATGGAAACCTTTGAGTTCCTAAATATATTGCAAGTTCATGGGTTCCCAAAGGTCATGGGGGTTCTCACCCATCTTGATAAATTCAAGGATGTGAAAAAGTTGAGGAAAACAAAACAAAGACTTAAACACCGGTTTTGGACGGAGATATATGATGGGGCTAAACTATTTTACTTATCAGGCCTAATTCATGGAAAGTATGTTAAGCGGGAAGTTCACAATCTTGCTCGATTTATTTCAGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCACCCTTATGTTTTAGCTGATCGTTTTGAAGACATCACTCCTCCTGAAAAATTGCACGCAAATGATAAATGTGACAGAAAAGTCACCCTTTATGGTTATCTTAGAGGATGTAATTTGAAAAGGGGCAATAAGGTACACATAGCAGGAGTGGGTGATTATAGCTTAACTTGTATTACTGCTTTACCCGATCCTTGTCCTCTTCCATCTGCTGCAAAAAAGAAAGGACTGCGGGATAAGGAAAAATTATTCTATGCTCCTATGTCTGGACTTGGGGATCTTTTGTATGACAAAGATGCTGTATACATAAATATTAACGACCACCTTGTTCAATTCTCAAAAGTTGATGGTGAAAACTCTGCTATGACAAGCAAAGGAAAGGACAGAGATGTAGGAGAGGTTTTGGTGAAATCACTACAGAATACCAAATACTCGATCAATGAAAAGCTGGAGAACAGCTTTATCAGTCTTTTTGGTGAAAAGCCTAAAGTATCATCAGAAGCTCTTGCTGATGCTCATGGCACAAACAATGATGAAGAACAGACTGAGGCTGTTATAAACACAAAGGATTTGGATGGTTCAGAATCATCTGATCAGGATGAAGAGGACACTATGAAAGAAAGTGAAGCTTTTGGTTCTGACGATGAAGAGTCACCAAATAGTAATTCTTTGAATGGAGACCAAATACAAGAACATATTGAGTTTCATGATGGAAGACGAAGGCGGAGAGCAATATTTGGAAATGATATTGATCAAAGGGATGTGATGGATTCAGAAGGAGACGAGGATGGTGTTGCCAGTGATGATCTTGCATCTTCTGATTCAGAATCTTCAGAAGAAGAGGAGGAAGATGATAATGTTGACACAAATGAAGATGGCATGGGTAATGTTTCCAAGTGGAAAGAGTCTTTGGCAGAAAGAACTCTCTCACGGAAAGTTCCTGGCTTGATGCAACTTGTGTATGGGGAATCTACTAATAATACAATCACTACAAACACACAGAATGATAATAGTGGAGATGAGGAAAGTGATGATGACTTTTTTAAGCCCATAGAAGAAGTGAAAAAGCAAAACATGAGAGATGGATTGGATGATGATGGAGTGGTCAACACTGAGGATTGTTCCAAGTGTACACAATTTGTGGATCAGAAATGGGATGAGGAGATTCGCAACCGCTTTGTGTCTGGCAATTTGGCAAAAGCTGCACTCAGAAATGCATTACAATCAGCTAATACTGAAGGAGAAAATGATGATGTCTTTGGTGACTTTGAAGATTTGGAAACGGGAGAAAAACATGAGAATTATCGAACAGATGATGCTGCAACAACACTCAAGGGAGATGATTTGGAAGCTGAGGAGCGGAGGCTTAAGAAACGTGCTCTCCAGGAAGACACTGGTAATGAAAGTGAACGCAAGTTCCATCGTGGTCAAGCTAATGAAAGTAGCTATTTTGACAAGTTGAAGGAGGAGATTGAACTCCAGAAACAAAGGAATATAGCTGAACTCAATGATCTTGATGAAGATACCCGATTGGAGATAGAAGGGTTCCGAACAGGGACATACCTAAGGTTGGAGGTTGATGATGTTCCTTGTGAGATGGTTGAATACTTTGATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTATAGGAGAGGAAAATGTTGGATATATGCAGACAAGGTTAAAGCGGCACAGGTGGCACAAGAAAGTTTTGAAGACTAGAGATCCAATTATTGTATCTGTTGGATGGAGGCGTTACCAGACAACCCCAGTTTATGCCATTGAGGATAGCAATGGAAGGCATCGAATGCTTAAGTACACTCCGGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCTCCTCCCAACACTGGGGTTGTAGCTGTTCAGAATTTATCAAACAATCAGGCAACGTTTAGGATTACTGCCACTGCAGTTGTGCTTGAGTTTAATCATGCAGCAAGGATAGTGAAGAAAATCAAATTGGTTGGTTATCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGGTTTGAAGGTGCAGCTATTCAAACAGTCAGTGGGATTAGGGGGCAGGTCAAGAAGGTCGCAAAAGAAGAAATAGGTAATCAAGCAAAAAGGAAGGGTGGGCAAACTAAAGAAGGAATTGCTAGGTGCACTTTTGAAGATAAAATCCTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTCCCTCAGTTTTATAATCCATTGACAACTGCATTACAGCCTCGTGAAAAGACCTGGAAAGGAATGAGGACCGTTGCAGAATTGAGAAGAGAACACAATCTTCCTGTTCCTGTAAATAAAGATTCACTTTACAAGAAAATTGAAAGAAAACCTAGAAAGTTCAATCCATTGGTAATTCCCAAGTCTCTTCAAGCAAGTCTCCCCTTTGCCTCAAAACCCAAGGATATACCCAAGCGAAAGAAGCCCTTACTTGAAGAGAGAAGGGGAAGGGGTGTTGTCATGGAACCTCGAGAGCGCAAAGTTCATGCTCTTGTTCAACATCTCCAGTTAATAAATAATGAGAAGATGAAAAAGCGAAAGCTTAAGGAAGAGAAGAAAAGGAAAGAACTTGAAGCAGAGAGAGCAAAAGATGAGCAGTTGTTGAAGAAGCGCCGGAGAGAGGAAAGACGTGGGAAATACCGGGCAGAAGACAAGCAGAACAAGAGAATTCGGAGAGCATAG 3525 0.4196 MAVDDADQSNRAHRSRQSGSKSAKKKSKKKQNQDDGGEDQKNQNPKAFAFSSSNKAKRLQSRTVEKEQRRLHAPIIDRSYGEAAPYVVVVQGPPQVGKSLLIKSLVKHYTKHNLPDVRGPITIVSGKQRRVQFVECPNDINGMIDAAKFADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDKFKDVKKLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYVKREVHNLARFISVMKFHPLSWRTSHPYVLADRFEDITPPEKLHANDKCDRKVTLYGYLRGCNLKRGNKVHIAGVGDYSLTCITALPDPCPLPSAAKKKGLRDKEKLFYAPMSGLGDLLYDKDAVYININDHLVQFSKVDGENSAMTSKGKDRDVGEVLVKSLQNTKYSINEKLENSFISLFGEKPKVSSEALADAHGTNNDEEQTEAVINTKDLDGSESSDQDEEDTMKESEAFGSDDEESPNSNSLNGDQIQEHIEFHDGRRRRRAIFGNDIDQRDVMDSEGDEDGVASDDLASSDSESSEEEEEDDNVDTNEDGMGNVSKWKESLAERTLSRKVPGLMQLVYGESTNNTITTNTQNDNSGDEESDDDFFKPIEEVKKQNMRDGLDDDGVVNTEDCSKCTQFVDQKWDEEIRNRFVSGNLAKAALRNALQSANTEGENDDVFGDFEDLETGEKHENYRTDDAATTLKGDDLEAEERRLKKRALQEDTGNESERKFHRGQANESSYFDKLKEEIELQKQRNIAELNDLDEDTRLEIEGFRTGTYLRLEVDDVPCEMVEYFDPYHPILVGGVGIGEENVGYMQTRLKRHRWHKKVLKTRDPIIVSVGWRRYQTTPVYAIEDSNGRHRMLKYTPEHMHCLAMFWGPLAPPNTGVVAVQNLSNNQATFRITATAVVLEFNHAARIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIQTVSGIRGQVKKVAKEEIGNQAKRKGGQTKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPREKTWKGMRTVAELRREHNLPVPVNKDSLYKKIERKPRKFNPLVIPKSLQASLPFASKPKDIPKRKKPLLEERRGRGVVMEPRERKVHALVQHLQLINNEKMKKRKLKEEKKRKELEAERAKDEQLLKKRRREERRGKYRAEDKQNKRIRRA 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00586 1174 MobiDBLite consensus disorder prediction 449 464 - -
Phco9g00586 1174 SMART DUF663_2 693 1007 IPR007034 -
Phco9g00586 1174 Pfam AARP2CN (NUC121) domain 234 319 IPR012948 GO:0005634|GO:0042254
Phco9g00586 1174 Coils Coil 1171 1174 - -
Phco9g00586 1174 MobiDBLite consensus disorder prediction 504 552 - -
Phco9g00586 1174 MobiDBLite consensus disorder prediction 682 733 - -
Phco9g00586 1174 MobiDBLite consensus disorder prediction 509 544 - -
Phco9g00586 1174 Coils Coil 1112 1158 - -
Phco9g00586 1174 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 85 221 IPR027417 -
Phco9g00586 1174 Pfam 40S ribosome biogenesis protein Tsr1 and BMS1 C-terminal 704 1008 IPR007034 -
Phco9g00586 1174 MobiDBLite consensus disorder prediction 1124 1174 - -
Phco9g00586 1174 CDD BMS1 47 276 IPR037875 GO:0005525
Phco9g00586 1174 PANTHER RIBOSOME BIOGENESIS PROTEIN 6 1158 IPR039761 GO:0042254
Phco9g00586 1174 MobiDBLite consensus disorder prediction 422 481 - -
Phco9g00586 1174 Gene3D - 86 248 IPR027417 -
Phco9g00586 1174 SMART aarp2cn2 234 320 IPR012948 GO:0005634|GO:0042254
Phco9g00586 1174 MobiDBLite consensus disorder prediction 44 58 - -
Phco9g00586 1174 Coils Coil 742 762 - -
Phco9g00586 1174 ProSiteProfiles Bms1-type guanine nucleotide-binding (G) domain profile. 84 248 IPR030387 -
Phco9g00586 1174 MobiDBLite consensus disorder prediction 1 67 - -
Phco9g00586 1174 FunFam BMS1 ribosome biogenesis factor 86 248 - -
Phco9g00586 1174 MobiDBLite consensus disorder prediction 579 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00586 Phco-Chr9 4251992 4259711 Dispersed