Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00575 ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCATACAAGGAAATGGCAGGGAGATGTGGCAGATGGATTATTATCAAGGCAAACCAGTCTTCTTCATCATCGTCAACAACACCAAGTTACAGAAAGTCCCAGAGGGGTTTCTGAAGCATTTGAATGAAGACTTGCCAAATGCAGTTCTTGTTAGTCCTACTGGTGATAACTGGCAAATAAGTATTTTGAAGAAAGGAAATAACATTTATATGCAAGATGGTTGGCCACAATTTCTGACAGACAACTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGGAACTGCTTCCATGTTCAAATCTTTGGTAAGAATGGATTGGAGAGGCTATGTTTCAAACAAACAAGACAAGATCAAGTTCTGATTCCAAGTTTGGTGAGGACAAAGAAGAGCACACAGAGAAGAACTTTTGCCAGTTCATTCCTCCACCAAGCCAAGTCTTGTAAAAAAGGTCTGTCTTTTAGCAACAAAATCTCATTTTCTAAGGACTTCCAAAAGCTCAAGAGCTCAATTAAGATTGAAAGCACAGAAGCTTGCAACTTGGCAGACTCTTTTACCTCTCGCAATCCTCATTGGAAGCACCTCATGACAAAATGCAATGTAGAAGACCACTGCACATTGCCAATTGCCACCGAGTTTGCCAGGAAGCATATTCCTGAAGCAGTGAAACAGATCATTCTTTGGAACACAGAAGGAAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAGAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGGCTTATGAGGGGTGACACTTGCATATTTGAACTTGAAGATGAAAACCATTTGAGTGTTCACATATTTAGAACAGGATTATGTGCGCCAAGACTACACTCAAGTTGCTTCTATGCTCCACAGCTCAACTCTGTCAACTGCTTGATGACTAGTGGTGAGAAGAAATACCCTTGCTTCTTCAAAATCTTCCTTCCAGAGCAACATTCTCTCATAATGAAAGTTCCAAAGGAGTTTTTGAAACACTTGAATGAAGACTTGTTGAGTAATGCTGTTCTTAGTGGCCCTTCTTCTGGTGACCAGTGGCAAGTAAGTGTTTTGAAGAAAGGAAATGATGTGTATATGCAAAATGGTTGGCCACAATTTGTGACAGACAACTTAGTGGTGCTTAATGAGTTCTTGCTTTTTACATATCGTGGAAAGAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATTGGAGAGGTTATGCCTCAGAGAAACAAGACAAGAACAAGCTCTCATCCCAAAGAAGAGTACACAAAAATTTGCAGGTTCATTCGCTCATAAGTCCAAGTCTTGTAAAAGAGATACGCCTTTCAGCAACAAAGGCTTCGTTTTTACTGGATGTGAGACAATGGAAACAAGACAAAAACAAACTGCCACCCCAAGTTTGGCAAGAACAAAGAAGAACAAAGAAGGAAAGTTTTCTCCCGGTGCATCACACCTTCATGAATCTAAGTCTTATCAACAGGATTTGTCCTTCAGCAACAAAGCCTCTCTTCCGAAGGACTTCCCAACTCCTCAGCATTCAATTGAAATTGAAAGTTTGGAAGCACAGAAATTGGCCCAGTCCTTTACCTCTTGCAATCCTCATTGGAAGCACCTCATGACAAAATCTAATGTGGGAGATTGTTGCATATTGCCTATTGCTACTGAGTTTGCTAGAAAGTATATTCCTGAAGAAGTGAAACAGATCCACATTGGAAATTATAAAGGAACATCTTGGGAAGTGCAAGTGAATTGTTTCAAAAATCAAAATAGAAGATATGCTCAGTTGACAACAGGATGGGTAAATTTCGTTCGTGATAACAAGCTCACGAGAGGTGACACTTGCATATTTGAACTTGAAGAAGACTTCCATTTGAGGGTTCACATATTCAGAACCAGATGTGCGCCATGTTAA 2001 0.3958 MTMRDFSFYQKALIIQGNGREMWQMDYYQGKPVFFIIVNNTKLQKVPEGFLKHLNEDLPNAVLVSPTGDNWQISILKKGNNIYMQDGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLIPSLVRTKKSTQRRTFASSFLHQAKSCKKGLSFSNKISFSKDFQKLKSSIKIESTEACNLADSFTSRNPHWKHLMTKCNVEDHCTLPIATEFARKHIPEAVKQIILWNTEGKFWEVVVTWFGCQNKRYTRFTTGWGRFVRDNRLMRGDTCIFELEDENHLSVHIFRTGLCAPRLHSSCFYAPQLNSVNCLMTSGEKKYPCFFKIFLPEQHSLIMKVPKEFLKHLNEDLLSNAVLSGPSSGDQWQVSVLKKGNDVYMQNGWPQFVTDNLVVLNEFLLFTYRGKNCFHVQIFGKNGLERLCLRETRQEQALIPKKSTQKFAGSFAHKSKSCKRDTPFSNKGFVFTGCETMETRQKQTATPSLARTKKNKEGKFSPGASHLHESKSYQQDLSFSNKASLPKDFPTPQHSIEIESLEAQKLAQSFTSCNPHWKHLMTKSNVGDCCILPIATEFARKYIPEEVKQIHIGNYKGTSWEVQVNCFKNQNRRYAQLTTGWVNFVRDNKLTRGDTCIFELEEDFHLRVHIFRTRCAPC 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00575 666 ProSiteProfiles B3 DNA-binding domain profile. 208 305 IPR003340 GO:0003677
Phco9g00575 666 Pfam B3 DNA binding domain 338 429 IPR003340 GO:0003677
Phco9g00575 666 Pfam B3 DNA binding domain 211 304 IPR003340 GO:0003677
Phco9g00575 666 Pfam B3 DNA binding domain 42 120 IPR003340 GO:0003677
Phco9g00575 666 Pfam B3 DNA binding domain 568 661 IPR003340 GO:0003677
Phco9g00575 666 SUPERFAMILY DNA-binding pseudobarrel domain 203 308 IPR015300 -
Phco9g00575 666 ProSiteProfiles B3 DNA-binding domain profile. 29 121 IPR003340 GO:0003677
Phco9g00575 666 ProSiteProfiles B3 DNA-binding domain profile. 351 430 IPR003340 GO:0003677
Phco9g00575 666 Gene3D - 25 122 IPR015300 -
Phco9g00575 666 Gene3D - 329 431 IPR015300 -
Phco9g00575 666 Gene3D - 187 305 IPR015300 -
Phco9g00575 666 Gene3D - 544 662 IPR015300 -
Phco9g00575 666 CDD B3_DNA 212 303 IPR003340 GO:0003677
Phco9g00575 666 CDD B3_DNA 32 118 IPR003340 GO:0003677
Phco9g00575 666 SUPERFAMILY DNA-binding pseudobarrel domain 561 663 IPR015300 -
Phco9g00575 666 CDD B3_DNA 569 660 IPR003340 GO:0003677
Phco9g00575 666 SUPERFAMILY DNA-binding pseudobarrel domain 333 431 IPR015300 -
Phco9g00575 666 MobiDBLite consensus disorder prediction 490 516 - -
Phco9g00575 666 CDD B3_DNA 336 427 IPR003340 GO:0003677
Phco9g00575 666 SUPERFAMILY DNA-binding pseudobarrel domain 31 122 IPR015300 -
Phco9g00575 666 ProSiteProfiles B3 DNA-binding domain profile. 565 662 IPR003340 GO:0003677
Phco9g00575 666 PANTHER B3 DOMAIN-CONTAINING 332 650 - -
Phco9g00575 666 SMART B3_2 34 121 IPR003340 GO:0003677
Phco9g00575 666 SMART B3_2 208 305 IPR003340 GO:0003677
Phco9g00575 666 SMART B3_2 338 430 IPR003340 GO:0003677
Phco9g00575 666 SMART B3_2 565 662 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00575 Phco-Chr9 4156253 4164370 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco9g00575 B3 3.3e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00575 9 4156253 4164370 Phco9g00575 9 4156253 4164370 ECH