Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00574 ATGACGCACCCTTCTTTCCACAAGCTTCTTCTCCCCTCCACTCTCCAACCCAACCAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGGGGTGAACTTTCTCCAATTGTTACCCTCTCTGTTCCTGATGGTAGTGTCTGGCGTGTAGGATTGAAAAAGGCAGACAACAAGTATTGGTTCCTTGACGGTTGGCAAGACTTTATTCAGCACTATTCCATTGGGGTTGGATACTTGTTGGTTTTCAGATACGAAGGAAAGTCATCTTTCAATGTTCATGTTTTTAATTTGGCTACTTCTGAGATAAACTATCAATCAGCCATGCGATGTAGTAATGAAGGGCCTCACTTTGCAAATCTACTTAAATTTTTTGAAGAAATGGATGATGAAGATTCTATTGAAATCTTGGATTCATCACCTTCCCATCTTGCTCCCAGTTCATTGCAAAATAAAGTTCTTGCTGGATCAGTAGATAAAATGTCGCCTGGAAAGTGTTATACACCTCCAGCATTGCAGAATCTGTTCAATGGATCTAAACTTAATAGCATAAACTGGGGAGAGGGTGGTGATGCACATTGTTCGAAAAGTGCCAATTCCCTGGATAATCGATTGACAAGAGACATAGGAGTTCAATTTAATGCAGTTGAGTTTAAAAGATCTACTGAAGAATTGAAATTACGTGCTTCCATGGAGGAAAGGATGAAAAAAACTGCAAGAAAGAAGCGGAAATCAGATGGACAGGAAGCCTCTGCTGAACAAGAAGAGGAAGTTGAAATGCGCTTTAGATTTTATGAAAGTGCTTCGGCAAGAAAAAGAACTGTGACAGCAGAAGAAAGGGAGAGGGCCATCAATGCAGCCAAAGCATTTGAACCACCTAATCCTTTCTGTCGGGTTGTCCTAAGGCCCTCCTATCTATACAGAGGATGCATAATGTATCTGCCATCCTGTTTTGCAGAAAAACATTTGAATGGAGTTTCGGGTTTTATTAAACTTCAGATCTCTAATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGGGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAGTTTTCATTAGAGAACAATTTAGGAGAAGGTGATGTGTGTGTGTTTGAGCTTCTTAGAATGAAAGAAGTAGTGCTGCAAGTTAGCATCTTTCGCATTACTGAGGATGTGGGATTGTTGAGCCCCCCTCCTCTGCAGCAGAATCAAAATATGAGCTCAGCTAAACTGCTGAACACTCCCTTGCAGCAACACCTTACTTCAACTAAAATGATTAGAAATTAG 1293 0.4138 MTHPSFHKLLLPSTLQPNQLRLPDDFMRKYGGELSPIVTLSVPDGSVWRVGLKKADNKYWFLDGWQDFIQHYSIGVGYLLVFRYEGKSSFNVHVFNLATSEINYQSAMRCSNEGPHFANLLKFFEEMDDEDSIEILDSSPSHLAPSSLQNKVLAGSVDKMSPGKCYTPPALQNLFNGSKLNSINWGEGGDAHCSKSANSLDNRLTRDIGVQFNAVEFKRSTEELKLRASMEERMKKTARKKRKSDGQEASAEQEEEVEMRFRFYESASARKRTVTAEERERAINAAKAFEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQISNGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELLRMKEVVLQVSIFRITEDVGLLSPPPLQQNQNMSSAKLLNTPLQQHLTSTKMIRN 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00574 430 CDD B3_DNA 4 96 IPR003340 GO:0003677
Phco9g00574 430 PANTHER B3 DOMAIN-CONTAINING 3 379 - -
Phco9g00574 430 Pfam B3 DNA binding domain 6 95 IPR003340 GO:0003677
Phco9g00574 430 Pfam B3 DNA binding domain 299 389 IPR003340 GO:0003677
Phco9g00574 430 SUPERFAMILY DNA-binding pseudobarrel domain 2 96 IPR015300 -
Phco9g00574 430 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Phco9g00574 430 Gene3D - 1 98 IPR015300 -
Phco9g00574 430 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Phco9g00574 430 SMART B3_2 6 98 IPR003340 GO:0003677
Phco9g00574 430 SMART B3_2 296 391 IPR003340 GO:0003677
Phco9g00574 430 Gene3D - 273 393 IPR015300 -
Phco9g00574 430 MobiDBLite consensus disorder prediction 233 254 - -
Phco9g00574 430 CDD B3_DNA 294 389 IPR003340 GO:0003677
Phco9g00574 430 SUPERFAMILY DNA-binding pseudobarrel domain 289 390 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00574 Phco-Chr9 4146537 4149351 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco9g00574 B3 6.6e-16 CL0405