Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00573 ATGAGTGGTGCGGAGAAGTACCCAGATTTCTTCAAAGTCTTCCTTCAAGAACAACACTACGAAAGAATGCTTATTCCAAATGCTTTTGTGAAGTTGCAAGGGTTACAGGGAAGGATCCCTGAGGATGTTCTCCTGAGGAATCGTAGTGAGAGAGTGTGGCATGTTAAAACACGTTTTTTTGGAGACAGATTATATTTCGATGATGGGTGGAAGATTTTCCATAAAGAAAACTTCTTAGGAAATGCAGATTTTCTAGTATTCAGATATGACGGGGTTAATGAGTTTAGGGTCACAATCCTTGAAACATCAACGCAGTGTGAGAAAACTCTGGTAAAGATGGAGGAGGAGGAGGTGAATGAAGAAGGGAAAGCAGCAGAAGTTGAAGAGACAGTGATAACACAGGAGGAACAAGCTGAGGACTGTGACATAGAGGAGGAGGAAGACAGCCAAGATCAGGACTACGATGACGACAATGACGATAGTGATTTTGATGATGCTGATGATGATGATGATGATGATGATGAGAACACAGAGATGGAAGAAGAGAGTGAAGAAGAAAACAGTGTTGGTCCTGTTGGATACGCGAGTCAACGTTATCGCAAACCTTGCCGAAGGGACACTGCATCAAGTTCCCACCCCCAGACTGAAGACACTTTCAAAGACGATGAATTTGATCCTGAAATGTGCATTCAGCCAGAGAATAATTTTTTTGAAGCAAAACTCTACAGAAGTAGACCCAATGAATTGCATATTCCAGGAATCGCCATTCAAGATTTTTCCCTTAGTTTTCCTGAAAAGATTACCCTTAAATGTTGCCAACACTGCCAGCGTAAGGATATTCAAAGAAACCAATTGCAAGACTATCATCTCAACTTGACACAACAGGCACCCATCAGAAAAAGATATTTAGAAGTGACAGGAAAAGTGTGTAGGTGGCAAGATGATAGAATATGTATCAAGGGTTGGGCTAACTTCAGTAGAAGAAACAAGATAAAAAATAATGATGTATGCATCTGTGAAGTTATATCAGGGGACGACCAAGTAGTAAGAACATTTCTGGTGCACGTTATTGTCACATCTTCAACACGTAATGCTGCAACTGAGATTTTCCAGATTGCAGTCATCATGAATGAACTTGTTCTTATTGAGATTGCTAAGGATTTCTTCTCTAAATTGAAGCATCTTTGGAAGAGTCCGAGTGAGAATCTCATGAACTTCATTTAG 1224 0.4036 MSGAEKYPDFFKVFLQEQHYERMLIPNAFVKLQGLQGRIPEDVLLRNRSERVWHVKTRFFGDRLYFDDGWKIFHKENFLGNADFLVFRYDGVNEFRVTILETSTQCEKTLVKMEEEEVNEEGKAAEVEETVITQEEQAEDCDIEEEEDSQDQDYDDDNDDSDFDDADDDDDDDDENTEMEEESEEENSVGPVGYASQRYRKPCRRDTASSSHPQTEDTFKDDEFDPEMCIQPENNFFEAKLYRSRPNELHIPGIAIQDFSLSFPEKITLKCCQHCQRKDIQRNQLQDYHLNLTQQAPIRKRYLEVTGKVCRWQDDRICIKGWANFSRRNKIKNNDVCICEVISGDDQVVRTFLVHVIVTSSTRNAATEIFQIAVIMNELVLIEIAKDFFSKLKHLWKSPSENLMNFI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00573 407 MobiDBLite consensus disorder prediction 199 226 - -
Phco9g00573 407 SUPERFAMILY DNA-binding pseudobarrel domain 306 356 IPR015300 -
Phco9g00573 407 ProSiteProfiles B3 DNA-binding domain profile. 8 103 IPR003340 GO:0003677
Phco9g00573 407 Gene3D - 220 360 IPR015300 -
Phco9g00573 407 SUPERFAMILY DNA-binding pseudobarrel domain 6 102 IPR015300 -
Phco9g00573 407 MobiDBLite consensus disorder prediction 132 187 - -
Phco9g00573 407 Gene3D - 2 106 IPR015300 -
Phco9g00573 407 CDD B3_DNA 8 100 IPR003340 GO:0003677
Phco9g00573 407 MobiDBLite consensus disorder prediction 116 226 - -
Phco9g00573 407 MobiDBLite consensus disorder prediction 116 130 - -
Phco9g00573 407 PANTHER B3 DOMAIN-CONTAINING 5 345 - -
Phco9g00573 407 SMART B3_2 10 103 IPR003340 GO:0003677
Phco9g00573 407 Coils Coil 110 130 - -
Phco9g00573 407 Pfam B3 DNA binding domain 10 100 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00573 Phco-Chr9 4139996 4142430 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Phco9g00573 B3 3.4e-13 CL0405