Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00565 | ATGACAAATGCACATGGTGGCTCCATGTTAGTGGAGCTAAATACACATAACACCGTACATAAATCCAAATTTGAAACATTATCACATCCTGAACCTATTTCGTTTAACAGTTTTAATAATGAGGACGATGACTTCAACTTTAGCCATAATAGCAGCACCACAAGCAGTAATAATGCCTCTCCTTATTCTATGTCCCCATGGAACTACCAACCCAATACTTATTCTCCTCTCAACAAGTCCCCATGGTTATTACCTAACTCACCTGAGAGCCTCTTCAACCACCATAATGAAGATAATCACCCTGACACTGAGCTCATCGGATCGCTTGTCCGCAAAACAGGTCACATATACTCCTTAGCTGTTTCTGGGGAATTGTTATACACAGGCTCGCACAGTAAGAACATAAGAGTTTGGAAGCAGCTCAAAGACTTCACTGGTTTTAAATCAAGCAGTGGATTGGTCAAAACCATAGTAATCTACGGTGGTAAAATTTTCACTGGCCACCAAGATGGGAAAATCAGAGTGTGGAAAGTCTCATCAAAGAATCCAAATAACCACAAACGCATAGGGAGCTTGCCCACGTTTAAAGAATATGTGAAAAGTTCCATGAACCCAAAGAACTACGTGGAGGTTCGGAGACGTAAGAACGCATTGAAGGTGAAACACTTTGATGCCATTTCGAGTTTAAGCCTAGACAAGGAAGAAGGGTTATTGTACTCGGGGTCATGGGATAGGACGTTCAAGGTGTGGCGCGTGGCAGATTCAAAATGCTTAGATTCTATTAATGCACACGATGATGCGGTGAACGCGGTGGTAGCATTGTTTAGCGGACGCGTGTTGACTGGATCCGCTGATGGGACTGTGAAGTTATGGAAGAGGGTGAATGGTCAAAAAGGGGAGAAAGGGGAGAAGGGGAAAAAGTCAAAGCATGTCTTGGATCGGATTTTGCTAAAGCAAGAGAACGCTATTACATCGTTAGCAGTGAATTGTATGGCCACAGTGGTTTACTGTGGTTCTTCTGATGGTTTAGTGAACTTTTGGGAACGTGACCAGAAGGGTGAGTACTTGCAAGGTGATGTTTTAAAGGGACACAAACTCGCTGTGCTTTGCCTCGCTGTGGCTGGAAACCTCATTTTTAGTGGCTCAGCAGATAAGAATGTGTGTGTGTGGAGGTACAATAAGAATGGTATTCACACATGCCATTCAGTTTTGATAGGTCACACAGGCCCTGTTAAGTGTATTGCCGTGGAGGAAGAATACTTGCAATCCAAGAAGTGTCATGAACGTGAACAAGAGTGGATAGTGTACACTGGGAGCTTGGACAAGTCAGTGAAGGTGTGGCGTGTGTTTGAACAAGTGTCAGAGGTAGGCACATTCCAAAGCAAGACCCCTTTGAGTCATGTTGGTTCTCCCTATCGTTCTTCTTTAGGAGGGTTTAACTATTCCTCACCGGAAACAATGAGTGTTAATTCTTCCATGACAGAAATGAGTTATTCGTCGCTGCAAAATGCCATTGTTAGCCATGAAAATGACCTTAACAACCATAATAGTGATGCAAGCAAGAGCACTCCCAATGACAACAATAAGAATCGTGATAATGCTAAAAGTAGTGAAAAAGGAGACAAATATTACAATTGGGATGACATTCATGACAACAACTGCAACAATGATAACAACAAAGATTATGGTCCCAAAAACAATGATAACACTAGAATTAGTGATTATGGGAGTACCAAGCGAAATAACGGTGATATCACTAAAAATAATAACTTTACAGATAGTAGCAACAATGCTAAAAGCATTAACAACAAGAAAAGTGGTGATGATAGCAAGATTGACATCAATGACAAAATAAGGCAACACTTGTAG | 1869 | 0.4163 | MTNAHGGSMLVELNTHNTVHKSKFETLSHPEPISFNSFNNEDDDFNFSHNSSTTSSNNASPYSMSPWNYQPNTYSPLNKSPWLLPNSPESLFNHHNEDNHPDTELIGSLVRKTGHIYSLAVSGELLYTGSHSKNIRVWKQLKDFTGFKSSSGLVKTIVIYGGKIFTGHQDGKIRVWKVSSKNPNNHKRIGSLPTFKEYVKSSMNPKNYVEVRRRKNALKVKHFDAISSLSLDKEEGLLYSGSWDRTFKVWRVADSKCLDSINAHDDAVNAVVALFSGRVLTGSADGTVKLWKRVNGQKGEKGEKGKKSKHVLDRILLKQENAITSLAVNCMATVVYCGSSDGLVNFWERDQKGEYLQGDVLKGHKLAVLCLAVAGNLIFSGSADKNVCVWRYNKNGIHTCHSVLIGHTGPVKCIAVEEEYLQSKKCHEREQEWIVYTGSLDKSVKVWRVFEQVSEVGTFQSKTPLSHVGSPYRSSLGGFNYSSPETMSVNSSMTEMSYSSLQNAIVSHENDLNNHNSDASKSTPNDNNKNRDNAKSSEKGDKYYNWDDIHDNNCNNDNNKDYGPKNNDNTRISDYGSTKRNNGDITKNNNFTDSSNNAKSINNKKSGDDSKIDINDKIRQHL | 622 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00565 | 622 | Gene3D | - | 209 | 302 | IPR015943 | GO:0005515 | |
| Phco9g00565 | 622 | SUPERFAMILY | WD40 repeat-like | 100 | 451 | IPR036322 | GO:0005515 | |
| Phco9g00565 | 622 | MobiDBLite | consensus disorder prediction | 549 | 603 | - | - | |
| Phco9g00565 | 622 | CDD | WD40 | 113 | 448 | - | - | |
| Phco9g00565 | 622 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 261 | 292 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 361 | 390 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | MobiDBLite | consensus disorder prediction | 511 | 530 | - | - | |
| Phco9g00565 | 622 | Coils | Coil | 498 | 518 | - | - | |
| Phco9g00565 | 622 | PANTHER | F-BOX AND WD40 DOMAIN PROTEIN | 53 | 453 | IPR045182 | - | |
| Phco9g00565 | 622 | MobiDBLite | consensus disorder prediction | 531 | 548 | - | - | |
| Phco9g00565 | 622 | Gene3D | - | 98 | 206 | IPR015943 | GO:0005515 | |
| Phco9g00565 | 622 | Gene3D | - | 303 | 474 | IPR015943 | GO:0005515 | |
| Phco9g00565 | 622 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 219 | 260 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | Pfam | WD domain, G-beta repeat | 360 | 390 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | Pfam | WD domain, G-beta repeat | 256 | 292 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | Pfam | WD domain, G-beta repeat | 400 | 447 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | Pfam | WD domain, G-beta repeat | 222 | 250 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | PRINTS | G protein beta WD-40 repeat signature | 238 | 252 | IPR020472 | - | |
| Phco9g00565 | 622 | PRINTS | G protein beta WD-40 repeat signature | 279 | 293 | IPR020472 | - | |
| Phco9g00565 | 622 | PRINTS | G protein beta WD-40 repeat signature | 435 | 449 | IPR020472 | - | |
| Phco9g00565 | 622 | MobiDBLite | consensus disorder prediction | 604 | 622 | - | - | |
| Phco9g00565 | 622 | SMART | WD40_4 | 102 | 139 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | SMART | WD40_4 | 354 | 391 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | SMART | WD40_4 | 213 | 251 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | SMART | WD40_4 | 254 | 292 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | SMART | WD40_4 | 397 | 448 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | SMART | WD40_4 | 309 | 348 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | SMART | WD40_4 | 140 | 177 | IPR001680 | GO:0005515 | |
| Phco9g00565 | 622 | MobiDBLite | consensus disorder prediction | 511 | 622 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00565 | Phco-Chr9 | 4083815 | 4087302 | Dispersed/Wgd |