Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00506 ATGGCCTCAAGCTCTATCAACAAACAAAAGCCTTCTGACTCCTCTTGGACACCAAAACAGAACAAACTGTTTGAAAGAGCTCTTGCAAAATATGATAAGGATACCCCAGACCGGTGGCAGAATGTGGCCACAGCAGTAGGTGACAAATCTCCAGATGAGGTTAAGAGACACTATGAAATCCTCTTGGAGGATCTCAGACACATAGAGTCTGGCCGTGTTCCTCTCCCCAAATACAGGTCCACGGGAAGCAGCACCAATGTTGATGATGAAGAGAGACTTCTGAAGTATCTTAAGCTGAATTGA 303 0.4521 MASSSINKQKPSDSSWTPKQNKLFERALAKYDKDTPDRWQNVATAVGDKSPDEVKRHYEILLEDLRHIESGRVPLPKYRSTGSSTNVDDEERLLKYLKLN 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00506 100 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
Phco9g00506 100 SMART sant 12 64 IPR001005 -
Phco9g00506 100 FunFam Transcription factor SRM1 8 75 - -
Phco9g00506 100 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 86 IPR044636 GO:0003700
Phco9g00506 100 MobiDBLite consensus disorder prediction 1 20 - -
Phco9g00506 100 CDD SANT 15 62 IPR001005 -
Phco9g00506 100 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Phco9g00506 100 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Phco9g00506 100 Gene3D - 7 75 - -
Phco9g00506 100 Pfam Myb-like DNA-binding domain 14 58 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00506 Phco-Chr9 3693116 3694295 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Phco9g00506 Myb_DNA-binding 5.9e-06 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00506 9 3693116 3694295 Phco9g00506 9 3693116 3694295 ECH
Phco9g00506 9 3693116 3694295 Phco8g00476 8 4501007 4503260 ECH
Phco9g00506 9 3693116 3694295 Phco4g00961 4 7603236 7607032 ECH