Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00505 ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTTTTGGAAAGACAAAGGGAAGCAACCATCAAGTGGCAACACCACCATCACGACAATCACCACCCTTACTTTTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAACAATCTTCCTCAGAGTCAGGGCTTGGGCATGGCGCGTGATGATTCCGCGCTTGCTCAGGTCTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAACTCGACACTGGATTCGGATCTTCTTCCGTTATTTTACCCAAGGAAAGCAAGAAGAGGAAGGCTCAGAACACCAAGGTTGCTGCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTGAGTGGTGAAGAAGGAGAATCCAGAGTGACGCACCAAAGCAGCAACAAAAATGGCAAATCCAACGCAGTTAAGAACAACAGAGAAACCTCTGCGGATTCTTCCAAGGATAACTCGAAAGGGTCCGAGGTTCAGAACCAGAAGCGTGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCCGGCAAAGCTGGAATGCTTGATGAAATCATTAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTATTTGCCAGAGAGGTGTTTCCTTCTTTATCACAAGGTTTACCCAATATTGGGATGCCATCAGATATGAGTATGTGTAACAACCCTTCGTATCTTCAGTTCAATCCAACACAAGCACATGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATCAGCCCTCCCAATATAGGACTTCGAAGGAACATTAGTACTACACATGTACCTTTGTCCGAAGCGTTTCTTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCAAATTGGGAAGGTGATTTTCAAAGCCTTTACAATGTTGCTTTTGATCAAGGGCGAGCAACATCATTTCCTTCTCAGCCATTTCCAGGTCCAGTTGAAACTAGCAATCCGAAGATGGAGATGTAA 1170 0.4504 MLHCLNGSGNLGASCSDMTVLERQREATIKWQHHHHDNHHPYFSATEFHVNLVFSSSSNNLPQSQGLGMARDDSALAQVLAHSLKPDPGLCPELDTGFGSSSVILPKESKKRKAQNTKVAAESDNKDKRVKVSGEEGESRVTHQSSNKNGKSNAVKNNRETSADSSKDNSKGSEVQNQKREYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPSIDELFAREVFPSLSQGLPNIGMPSDMSMCNNPSYLQFNPTQAHVSCCGGLINNVGISPPNIGLRRNISTTHVPLSEAFLDSSCFTQILPSSNWEGDFQSLYNVAFDQGRATSFPSQPFPGPVETSNPKMEM 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00505 389 MobiDBLite consensus disorder prediction 143 160 - -
Phco9g00505 389 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 109 288 IPR024097 GO:0006355
Phco9g00505 389 MobiDBLite consensus disorder prediction 161 180 - -
Phco9g00505 389 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 241 IPR011598 GO:0046983
Phco9g00505 389 MobiDBLite consensus disorder prediction 106 142 - -
Phco9g00505 389 MobiDBLite consensus disorder prediction 106 180 - -
Phco9g00505 389 MobiDBLite consensus disorder prediction 370 389 - -
Phco9g00505 389 FunFam Basic helix-loop-helix transcription factor 188 260 - -
Phco9g00505 389 Pfam Helix-loop-helix DNA-binding domain 195 242 IPR011598 GO:0046983
Phco9g00505 389 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 261 IPR036638 GO:0046983
Phco9g00505 389 CDD bHLH_AtBPE_like 181 260 - -
Phco9g00505 389 SMART finulus 197 247 IPR011598 GO:0046983
Phco9g00505 389 Gene3D - 188 262 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00505 Phco-Chr9 3658281 3661064 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g00505 HLH 3.5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00505 9 3658281 3661064 Phco9g00505 9 3658281 3661064 ECH