Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00485 ATGTCCGGCCCTCTCGACCGTTTCGCCAGACCATGTTTCGAAGGTTTCTCCGGGAGCGATGAGAAGAAGGAGCGGAGATCTGATTTTGAGAACTCCGAGGACGAACGGAGGACCAGAATCGGATCTCTCAAGAAGAAGGCGCTGAATGCGTCGTCCAAGTTCAAGCACACGCTGAAGAAGAAGAGCAGCAGAAGGAAGAGCGATGGCCGTGTCAGCTCTGTTTCCATTGAGGATGTTCGGAATTTCGAGGAGCAGCAGACCGTTGATGCATTTCGCCAATCATTGATCATCGACGAATTGCTCCCTGGAAAACACGATGATTACCACGTTATGTTAAGGTTCCTGAAAGCGAGGAAGTTTGATATTGAAAGGGCAAAGCATATGTGGGCTGATATGCTACAATGGAGGAAGGAGTTTGGCGCTGACACTATTATAGAGGATTTTGAGTTCGCAGAATTAAATGAAGTTATGAAGTATTATCCGCATGGCCATCACGGTGTCGATAGGGAGGGAAGGCCTGTTTACATTGAGAGACTTGGGAAAGTGGATCCGAACAAACTTATGCAGGTTACGACCATGGATAGATATGTGAAATACCATGTACGGGAATTTGAGAAAGCTTTTAAGATAAAATTTCCTGCTTGCACAATTGCCGCCAAAAGGCACATAGATTCAAGCACCACGATATTAGATGTTCAGGGAGTGGGCCTCAAGAACTTTACAAAGTCTGCCCGGGAACTCATTATGCGGTTACAAAAGATTGATGGTGACAATTACCCTGAGACTCTTTGTCAAATGTTTATCATAAATGCCGGCCCTGGATTTAGGTTACTGTGGAACACCGTCAAGTCTTTCCTTGATCCCAAAACAACTTCCAAGATCCATGTTCTTGGAAATAAGTATCAAAGCAAATTGCTTGAAGTAATCGATGCCAGTGAGTTGCCGGAATTTCTGGGAGGTACCTGTACCTGTGAGGGTGGTTGCCTCAGATCTGATAAAGGACCCTGGAAAAACCCTGAAATTTTGAAGATGATTCTCAGTGGCGAAGCACGAAGAGCAAGGCCAGTGGTAAAAGTTCTAAACAGTGAAGGAAAGGTTATTGCTTATGCCAGCCCACAATACCCAATGGTAAAAGGAAGTGACACATCCACAGCTGAATCAGGGTCTGAAGCTGAAGATATTGCTTCTCCAAAAGCGATGAAGAGTTACTCTCACCTGAGGTTGACACCTGTTCGTGAGGAAGCTAAGGTTGTTGGAAAGTCAAGCTATGTTGGTGGTAGTAACTTGTCTGGGTATGATGAATATGTTCCGATGGTGGACAAAGCTGTTGATGCTGGCTGGAAGAAACAAGCATCACTGAGGGCTCAAACTTCAAAAGGAACACCTTCCCTCCCTAACCCTCCAAAAACTCCCGAAGGGATTCAAGCTCGGATGGTGGTGGCTCTAACTTCTTTCTTTATGACGCTGTTTAGTCTCTTCCATTCAGTTGCTTACCGTGTGACCAAGAAACTTCCTGTTTCATCATCTAATGAGGATCAGTGCACGTCAGAGGCACCCCTTAATACAACAACCGAAGACAATCATCCTCCTTCACCAACTCCAGCACACACAGAGGCAAAACTCCTTTCCTCAATGATGAAAAGGTTAGGCGAGCTTGAAGAGAAGGTTGACACACTCCAATCTAAGCCATCTGAGATGCCTTATGAGAAAGTGGAATTGCTAAATGCTGCTGTATGTCGGGTGGATGCTTTGGAAGCAGAGCTAATTGCAACTAAAAAGGCTCTGTATGAAGCATTAATGAGGCAAGAAGAGCTGCTTGCTTACATTGATAGTCAAGAAGAAGCTAAGTTGCGGAAGAAGTTTTGCTGGTGA 1872 0.4519 MSGPLDRFARPCFEGFSGSDEKKERRSDFENSEDERRTRIGSLKKKALNASSKFKHTLKKKSSRRKSDGRVSSVSIEDVRNFEEQQTVDAFRQSLIIDELLPGKHDDYHVMLRFLKARKFDIERAKHMWADMLQWRKEFGADTIIEDFEFAELNEVMKYYPHGHHGVDREGRPVYIERLGKVDPNKLMQVTTMDRYVKYHVREFEKAFKIKFPACTIAAKRHIDSSTTILDVQGVGLKNFTKSARELIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKSFLDPKTTSKIHVLGNKYQSKLLEVIDASELPEFLGGTCTCEGGCLRSDKGPWKNPEILKMILSGEARRARPVVKVLNSEGKVIAYASPQYPMVKGSDTSTAESGSEAEDIASPKAMKSYSHLRLTPVREEAKVVGKSSYVGGSNLSGYDEYVPMVDKAVDAGWKKQASLRAQTSKGTPSLPNPPKTPEGIQARMVVALTSFFMTLFSLFHSVAYRVTKKLPVSSSNEDQCTSEAPLNTTTEDNHPPSPTPAHTEAKLLSSMMKRLGELEEKVDTLQSKPSEMPYEKVELLNAAVCRVDALEAELIATKKALYEALMRQEELLAYIDSQEEAKLRKKFCW 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00485 623 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 24 612 - -
Phco9g00485 623 MobiDBLite consensus disorder prediction 51 66 - -
Phco9g00485 623 MobiDBLite consensus disorder prediction 1 42 - -
Phco9g00485 623 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 152 326 IPR001251 -
Phco9g00485 623 SMART sec14_4 152 323 IPR001251 -
Phco9g00485 623 Pfam CRAL/TRIO, N-terminal domain 105 131 IPR011074 -
Phco9g00485 623 SMART CRAL_TRIO_N_2 107 132 IPR011074 -
Phco9g00485 623 SUPERFAMILY CRAL/TRIO N-terminal domain 82 148 IPR036273 -
Phco9g00485 623 FunFam SEC14 cytosolic factor 140 350 - -
Phco9g00485 623 Coils Coil 542 562 - -
Phco9g00485 623 MobiDBLite consensus disorder prediction 51 70 - -
Phco9g00485 623 MobiDBLite consensus disorder prediction 507 531 - -
Phco9g00485 623 MobiDBLite consensus disorder prediction 453 472 - -
Phco9g00485 623 CDD SEC14 152 321 IPR001251 -
Phco9g00485 623 MobiDBLite consensus disorder prediction 507 537 - -
Phco9g00485 623 Pfam CRAL/TRIO domain 158 320 IPR001251 -
Phco9g00485 623 PRINTS Cellular retinaldehyde-binding protein signature 110 132 - -
Phco9g00485 623 PRINTS Cellular retinaldehyde-binding protein signature 279 298 - -
Phco9g00485 623 PRINTS Cellular retinaldehyde-binding protein signature 312 321 - -
Phco9g00485 623 SUPERFAMILY CRAL/TRIO domain 153 343 IPR036865 -
Phco9g00485 623 Gene3D - 76 139 - -
Phco9g00485 623 Gene3D - 140 348 IPR036865 -
Phco9g00485 623 MobiDBLite consensus disorder prediction 16 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00485 Phco-Chr9 3555031 3559638 Dispersed/Wgd