LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco9g00482	ATGGCTTCCTCAAGTGGAACATGTTCGGGGTCATCCTCTTTGCTTCAGAACTCAGGCTCTGAGGAGGATTTGCGAGCGGTAATGGATCAGAGAAAGAGGAAGAGAATGATATCAAATCGAGAATCTGCACGGCGATCTCGCATGAGGAAGCAGAAGCACTTGGACGATCTGGTTACCCAAGTGGCTCAGCTGAGAAAGGAGAATCAGCAGATACTCACCAGTGTCAACATCACCACACAACAGTTCTTGAGCGTTGAGGCTGAAAACTCAGTGCTGAGGGCTCAGGTGGGAGAGCTGAGCCACAGGCTAGAGTCTCTGAACGAGATCATCGAGGTTCTGAATGCGGGTTTCGGCAACACCACCTTCATTGAGCCAACCAGCAATAACTCCTTCTTCAACCCCATGAACATGGCGTATCTGAACCACCCCATCATGGCTTCTGCAGATATATTGCAGTACTGA	462	0.4978	MASSSGTCSGSSSLLQNSGSEEDLRAVMDQRKRKRMISNRESARRSRMRKQKHLDDLVTQVAQLRKENQQILTSVNITTQQFLSVEAENSVLRAQVGELSHRLESLNEIIEVLNAGFGNTTFIEPTSNNSFFNPMNMAYLNHPIMASADILQY	153

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco9g00482	153	CDD	bZIP_plant_GBF1	32	82	IPR045314	GO:0003700\|GO:0006355
	Phco9g00482	153	Pfam	bZIP transcription factor	31	73	IPR004827	GO:0003700\|GO:0006355
	Phco9g00482	153	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	29	92	IPR004827	GO:0003700\|GO:0006355
	Phco9g00482	153	MobiDBLite	consensus disorder prediction	1	20	-	-
	Phco9g00482	153	MobiDBLite	consensus disorder prediction	1	52	-	-
	Phco9g00482	153	MobiDBLite	consensus disorder prediction	24	52	-	-
	Phco9g00482	153	PANTHER	BZIP TRANSCRIPTION FACTOR 44	9	151	-	-
	Phco9g00482	153	FunFam	Basic region/leucine zipper protein	29	111	-	-
	Phco9g00482	153	Coils	Coil	47	74	-	-
	Phco9g00482	153	SMART	brlzneu	27	91	IPR004827	GO:0003700\|GO:0006355
	Phco9g00482	153	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	34	49	IPR004827	GO:0003700\|GO:0006355
	Phco9g00482	153	Gene3D	-	29	87	-	-
	Phco9g00482	153	SUPERFAMILY	Leucine zipper domain	31	83	IPR046347	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco9g00482	Phco-Chr9	3529523	3529984	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Phco9g00482		bZIP_1	1e-10	CL0018

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco9g00482	9	3529523	3529984	Phco9g00482	9	3529523	3529984	ECH