Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00477 ATGAATGGTCAGGAAGAGATTGCATCTTTCTCTTCACAAAAGCTAACTCCACCTTCTGCGGACCCGGCTGCTACTGAAGGAGCAGCCAGATGTATGAGTAGTAGGAAGGAAGAGAGAGAGATGAGAAGCGGTGTGTGTTACAGGCTATTGTTCTTGGTTTTGGTATGGTTCAGCGTGGCCAAGTGTTCTTCCTTCAGTGACATGGATGCGCTGCTGAAGCTCAAGAACTCCATGAAGGGACCCAAAGCCAAAGACGATGCTCTTCACGACTGGAACTCCTCCACCTCGCTTTCTGCACACTGTTCATTTTCAGGCGTTACGTGTGATCAAGACCTTCGAGTCGTTGCTATCAACGTCTCCTTCGTTCCACTCTTCGGCAACCTTCCGCCGGAGATTGGACAGTTCGACAAACTCCAAAACCTAACTATCGCGCAGGACAACCTCACCGGCCAACTTCCCAAGGAGCTCGCTGCCCTCACTTCCCTCAAGCTCCTCAACATCTCTCACAACTCCTTCTCCCACTATTTCCCCGGCCAAAGCATTCTTCCCATCACCCAACTCGAGGTTTTCGACGCCTACGACAACAACTTCATCGGACCGCTTCCGGAGGAATTCGTGAAACTGGAGAAACTCCGATACCTTAAGCTCGAGGGAAATTACTTTTCCGGCAGCATACCGGAGACATACTCGGAGTTTAAGAGCTTGGAGTTTTTGAGCTTAAGCACTAACAGTTTGTCGGGGAAGATTCCCGAGAGTTTGTCTCGGTTGAAGACGCTGACGTATCTAAAACTCGGATACAACAACGCTTACGAAGGTGGAATCCCGCCGGAGTTCGGCGCCATGAAATCTCTGATATACCTTGACCTCTCCAGCTGCAACCTCAGCGGCGAGATTCCACCGAGCCTGAGCAGTTTGAAGAAACTTGACACGTTGTTCTTGCAAATGAACAACCTTACCGGAACTATTCCTTCTGAATTCTCTGCAATGGAGAGCCTCATGTCACTGGATCTCTCCTTCAACGGTCTCACCGGAGAGATCCCGCAGAGTTTCTCTCAGCTCAGAAACCTCACTCTCATGAACTTCTTCCACAACAAGCTTAGCGGCTCTGTTCCCCCCTTCGTCGGCGAGCTTCCGAATCTGGAAACGCTGCAGCTCTGGGAGAACAACTTCTCCTTCGTGCTGCCCCCGAATCTGGGCCAAAACGGGAGGTTCAAGTTCTTCGACGTCACGAGCAATCACTTCACCGGGCTGATCCCTCCGGGTTTGTGCAAGAGTGGGAGGTTACAAACCTTCCTCATCACCGACAACTTCTTCCACGGTCCAATCCCTGATGATATAGGAAACTGCAAGTCTCTCATCAAGATCCGAGCCTCCAATAACTTCCTTAGCGGCGCCATTCCGTCAGGAATTTTCAAACTGCCTTCGGTCAAGATAATCGAACTCGCAAACAACCGTTTTGACGGCGAACTGCCTCCGGAGATTTCCGGCGATACTCTGGGGATTCTCACGCTTTCCAACAACTTACTGACGGGGAGAATTTCCCCGGCGTTGAAGAACTTGAGGGCACTGCAGACACTCTCCCTCGACGCGAACGAGTTGGTTGGAGAAATCCCGGGGGAGGTTTTTGTCTTACCAATGCTAACCACCGTAAACATAAGCGGCAACAATCTGACGGGAGCAATCCCAACGATGCTGATTCACTGCGTTTCACTCTCCTCCCTGGACCTCAGCAGGAACATGCTCGTCGGGGAGATTCCGAAGGGCATAAAAAACCTCACGGACTTGAGCATTTTGAATGTCTCCAGAAACCTGATAACAGGACCAATCCCCGACGAGATTCGGTTCATGGCTAGCCTCACAACGCTGGATCTCTCCTACAACAATTTCAAAGGCAAGCTCCCCACGGGTGGGCAGTTTTTTGTGTTCAGCGACAAGTCCTTTGCAGGGAACCCCAATCTCTGTTCCTCCCGCTCTTGCCCTAATTCCTCCATGTACCCTGACGACGCCATCAAAAAAAGGCGCGGCCCTTGGAGTTCCAAACCAACGAGGGTGATAATCATCGTGATCGCAATAGCCACCGCGGCGCTGCTGGTGGCGGTGACGGTGTACATGATGCGAAGGAGGATGCTTCACCGGGCGATGACGTGGAAGCTGACGGTGTTCCAGCGGTTGAACTGGAAAGCGGAGGACGTGGTGGAGTGTCTGAAGGAGGAGAACATAATAGGAAAAGGAGGGGCGGGGATCGTGTACCGCGGCTCCATGCCAAACGGAACCGACGTGGCTATAAAGCGGTTGGTTGGGGCGGGGAGCGGGAGAAACGATTACGGGTTCAGGGCTGAGATAGAAACGCTGGGGAAGATAAGGCACAGAAACATAATGAGACTTCTGGGTTACGTATCCAACAAGGAGACAAATTTGCTGCTTTACGAGTACATGCCGAATGGGAGCTTAGGAGAGTGGTTGCATGGGGCGAAGGGAGGGCACTTAAGGTGGGAGATGAGGTTCAAGATTGCAGTTGAAGCTGCTAGAGGACTCTGTTACTTGCACCATGATTGTTCCCCTCTCATCATTCACAGGGACGTTAAATCCAACAATATATTGCTCGACGCAAACTTCGAGGCCCATGTCGCCGATTTCGGACTTGCCAAGTTCCTCCACGACCCAGGTGCCTCTCAGTCCATGTCCTCCATTGCTGGCTCCTACGGCTACATTGCTCCAGAGTATGCTTACACGTTGAAAGTGGACGAGAAAAGCGATGTGTACAGCTTCGGGGTAGTGCTGCTGGAGCTGATAATAGGGAGAAAACCAGTGGGGGAGTTTGGAGATGGAGTGGACATCGTTGGATGGATCAACAAAATAAGATTGGAGATCTCTCCGCCGTCGGATGCAGCGTTGGTGTTGGCAGTGGTGGATCCGAGGCTCAGTGGGTATCCATTGGCAAGTGTGATTTACATGTTCAATATTGGGATGATGTGTGTTAAGGAAATGGGCCCAGCCAGGCCCACCATGAGGGAAGTGGTTCACATGCTCACCAATCCTCCTCACTCCACCACTCACACTCACAACCACAACCTCATTAATCTCTAA 3087 0.5157 MNGQEEIASFSSQKLTPPSADPAATEGAARCMSSRKEEREMRSGVCYRLLFLVLVWFSVAKCSSFSDMDALLKLKNSMKGPKAKDDALHDWNSSTSLSAHCSFSGVTCDQDLRVVAINVSFVPLFGNLPPEIGQFDKLQNLTIAQDNLTGQLPKELAALTSLKLLNISHNSFSHYFPGQSILPITQLEVFDAYDNNFIGPLPEEFVKLEKLRYLKLEGNYFSGSIPETYSEFKSLEFLSLSTNSLSGKIPESLSRLKTLTYLKLGYNNAYEGGIPPEFGAMKSLIYLDLSSCNLSGEIPPSLSSLKKLDTLFLQMNNLTGTIPSEFSAMESLMSLDLSFNGLTGEIPQSFSQLRNLTLMNFFHNKLSGSVPPFVGELPNLETLQLWENNFSFVLPPNLGQNGRFKFFDVTSNHFTGLIPPGLCKSGRLQTFLITDNFFHGPIPDDIGNCKSLIKIRASNNFLSGAIPSGIFKLPSVKIIELANNRFDGELPPEISGDTLGILTLSNNLLTGRISPALKNLRALQTLSLDANELVGEIPGEVFVLPMLTTVNISGNNLTGAIPTMLIHCVSLSSLDLSRNMLVGEIPKGIKNLTDLSILNVSRNLITGPIPDEIRFMASLTTLDLSYNNFKGKLPTGGQFFVFSDKSFAGNPNLCSSRSCPNSSMYPDDAIKKRRGPWSSKPTRVIIIVIAIATAALLVAVTVYMMRRRMLHRAMTWKLTVFQRLNWKAEDVVECLKEENIIGKGGAGIVYRGSMPNGTDVAIKRLVGAGSGRNDYGFRAEIETLGKIRHRNIMRLLGYVSNKETNLLLYEYMPNGSLGEWLHGAKGGHLRWEMRFKIAVEAARGLCYLHHDCSPLIIHRDVKSNNILLDANFEAHVADFGLAKFLHDPGASQSMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELIIGRKPVGEFGDGVDIVGWINKIRLEISPPSDAALVLAVVDPRLSGYPLASVIYMFNIGMMCVKEMGPARPTMREVVHMLTNPPHSTTHTHNHNLINL 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00477 1028 Pfam Leucine rich repeat N-terminal domain 66 109 IPR013210 -
Phco9g00477 1028 Pfam Leucine Rich Repeat 283 305 IPR001611 GO:0005515
Phco9g00477 1028 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 704 811 - -
Phco9g00477 1028 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 269 373 - -
Phco9g00477 1028 SMART LRR_typ_2 616 639 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 520 544 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 377 401 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 232 256 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 281 305 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 329 353 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 159 182 IPR003591 -
Phco9g00477 1028 SMART LRR_typ_2 473 497 IPR003591 -
Phco9g00477 1028 Gene3D Transferase(Phosphotransferase) domain 1 812 1026 - -
Phco9g00477 1028 SUPERFAMILY L domain-like 418 656 - -
Phco9g00477 1028 FunFam LRR receptor-like serine/threonine-protein kinase EFR 374 664 - -
Phco9g00477 1028 Gene3D Phosphorylase Kinase; domain 1 704 811 - -
Phco9g00477 1028 SMART serkin_6 735 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00477 1028 SUPERFAMILY Protein kinase-like (PK-like) 727 1010 IPR011009 -
Phco9g00477 1028 MobiDBLite consensus disorder prediction 1 31 - -
Phco9g00477 1028 Pfam Leucine Rich repeat 618 630 IPR001611 GO:0005515
Phco9g00477 1028 Gene3D Ribonuclease Inhibitor 370 665 IPR032675 -
Phco9g00477 1028 Gene3D Ribonuclease Inhibitor 180 269 IPR032675 -
Phco9g00477 1028 Gene3D Ribonuclease Inhibitor 270 369 IPR032675 -
Phco9g00477 1028 Gene3D Ribonuclease Inhibitor 66 179 IPR032675 -
Phco9g00477 1028 SUPERFAMILY RNI-like 117 439 - -
Phco9g00477 1028 MobiDBLite consensus disorder prediction 1 19 - -
Phco9g00477 1028 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515
Phco9g00477 1028 Pfam Leucine rich repeat 210 268 IPR001611 GO:0005515
Phco9g00477 1028 Pfam Leucine rich repeat 522 581 IPR001611 GO:0005515
Phco9g00477 1028 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 181 268 - -
Phco9g00477 1028 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 812 1026 - -
Phco9g00477 1028 ProSiteProfiles Protein kinase domain profile. 735 1018 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00477 1028 ProSitePatterns Serine/Threonine protein kinases active-site signature. 856 868 IPR008271 GO:0004672|GO:0006468
Phco9g00477 1028 Pfam Protein tyrosine and serine/threonine kinase 736 940 IPR001245 GO:0004672|GO:0006468
Phco9g00477 1028 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 330 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00477 Phco-Chr9 3480687 3484660 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco9g00477 PK_Tyr_Ser-Thr 2.3e-40 CL0016