Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00470 ATGTCTATGCAAGAACAAGGCTTAGAAACAGTGGTAAAGGGATCAAAGTGTGAAGAGTGTGGGAACCAAGCCAAAAAGGACTGTGCCTACTCAAGGTGCAGAACCTGCTGCAAGAACAAAGGCTTCAAGTGCCAAACTCATATCAGAAGCACTTGGATTCCTGTGGATAGAAGACGCCAGAAAGTGGAGCACCAACCTCTCACCACTAATCTTCAGCAGGGAGATATTCCTAAAAGGCACAAGCACAACCCATATTCAAGCTTGGAGTTCAAATTTCCAGCTGTTGCAAGTTCCATGGCGTCATTCAGCTGTGTTCAGGTGCGTTCTATGGATGACACGGTTAATGAAACGGCGTATCAAACTTCTGTGAACATTGGAGGACACGTGTTTAGTGGTTTTCTTTATGATCAAGGTCCTGAACAAAGCTTCAACGCTAAGGGTGACAACCCTTTTGATCAACAACACGATCTCAATCTTAGAAGTGTTTCACTCCACACTCGTGATGGTGCAAGTGCAACTATGCCTCCACTCTCACTCACTGCTTCTCAAGAACCATTTTTTATTCCACACCATTCATTTCCCCTAGCTTCCTTCAGACCTGATCTGACATACTTGTCACACCCAAAATCCCTCAAGGCCCAGATTAAAGCCCACAAGTTTTGGCGGGAATACACAAATCATTCCCCGCCATATCTTCCCGTTATTGACCACTACTCACCACTTACCGCGCTTTCTGTATCACGCTCACTCTTTCTTCTGTGTCTGAATTTTTCCGAGCACACCAAATCCATGGCTTCCGATTCTTCTCCGAATTTCAACAACGGTCCTTCTTCCCCCGACGACTCCCTTTCCAGCCCTATAGGCAACACGTTCTCGTCGCCGGGAAGTAGGCGCCGCCGCCGATCCTCCACCCCGTCCGCATTCGCCACTCCGTCGGAGCGCCGCTCTCGATTTGCCTCCTCCGAAGCCACCCCAACCGCGCCGCGCTCCCGCCAGAGCGTCGGCGGGCGCGTTCCCGCCACTCCTACATCCACCACCGATGACGTGCCAGCCTCTTCTGACGGCGGCGATGGCTACGACATGGACGACGCCAGGCCCACCTTCGTGTGGGGCACCAGCATAAGCGTGGAAGACGTGAACGATGCGATTCACAGGTTTTTGAGGGACTTTAGAGAGGCGTCTTCGTCACAGGCTGACGATAACGGGTTGCACTTGCACACCGAAGGGAAGTATGAGAAATTGATCAGACAGGTTATTGAAGTTGAAGGAGATTCTCTTGACGTTAATGCGCGCGACGTGTTTGATCATGACCCTGATTTGTACACCAAGATGGTTAGATACCCTCTTGAGGTGCTTGCTATCTTCGACTTAGTTTTGATGAATATGGTTAGCCGATTGAAGCCAATGTCTGAGAAGCACATTCAGACTCGGATTTTCAATCTCAAAAGCTCAACCTCAATGAGAAATTTGAACCCTTCTGATATTGAGAGGATGGTGTCATTGAAAGGAATGATTATAAGGTGTAGTTCAATTATACCTGAAATTAGGGAAGCTATATTTAGGTGTCTTGTTTGTGGATTTTGCTGTGACCCAATTCCGGTGGAGAGAGGACGAATAACGGAGCCCACTATATGTTTGAGGGAAGAGTGCCAATCCAGGAATTCCATGACACTTGTTCACAACCGATGCAGGTTTACTGATAAGCAAATTGTGAGGCTTCAGGAGACACCTGACGAGATACCTGAAGGAGGAACACCTCACACAGTTAGCTTGCTGCTGCATGATAAACTGGTGGATATTGGAAAGCCAGGTGACAGAGTTGAGGTTACTGGTATTTATAGGGCTATGACTGTTAGGGTTGGATCAACTCAGAGGACTGTTAAGTCATTGTTCAAGACATATATTGATTGTCTTCACATAAAGAAGACCCATAAGTCCAGGATGCAGGTAGAGGATGCTATGGATATTGACAGTGGCCCTGGCAGAAATGAAGATGGTGTCTTCTTTGAAGAAGAAAAAGTGGCTCGACTGAAGGAGATCTCAAAACGGCCAGATATATATGAAATACTGACAAAGTCATTGGCACCAAACATTTGGGAGCTAGATGACGTGAAGAAAGGCCTTCTTTGTCAGCTTTTTGGTGGCAATGCATTGAAATTAGCTTCTGGTGCCAGCTTCCGTGGTGATATAAATATTCTCCTTGTTGGTGATCCTGGGACAAGCAAGTCCCAGCTACTTCAATACATACACAAACTATCTCCACGAGGCATTTACACCAGTGGAAGGGGAAGCTCTGCAGTTGGACTGACTGCATATGTAGCCAAGGACCCTGAGACAGGAGAAACTGTTCTTGAGAGTGGTGCCCTTGTTTTGAGTGACCGAGGTATCTGTTGTATTGATGAATTTGACAAAATGTCTGACAATGCAAGGAGCATGTTACATGAGGTGATGGAACAACAAACCGTTTCAATAGCAAAGGCAGGTATAATTGCTTCCCTCAATGCTAGGACTTCGGTGTTGGCTTGTGCAAATCCAAGTGGTTCAAGATATAATCCTCGCTTATCTGTCATTGACAACATACACCTTCCTCCCACACTTCTGTCCAGGTTTGATTTAATCTACTTGATCCTTGACAAGGCTGATGAGCAGACTGACAGGCGCCTTGCCAAACATATTGTGGCTCTACACTTTGAGAATCCTGAGAATATGGAGCACGATGTGTTGGATATTTCTACATTAACAGATTATGTTAGCTATGCCCGAAAGCACATACACCCTCAGCTTTCTGATGAAGCTGCTGAAGAGTTGACTAGAGGTTATGTGGAAATAAGAAAAAGAGGAAATTTTCCTGGGAGTAGCAAAAAGGTGATAACAGCGACACCGAGGCAGATTGAGAGTCTGATTCGTCTAAGTGAAGCATTGGCTCGGATTCGCTTTTCGGAATGGGTCGAAAAGGATGATGTAACGGAGGCTTTCCGGCTTTTGGAAGTTGCAATGCAGCAGTCTGCAACGGATCATTCTACTGGAACCATTGATATGGATCTTATTACTACTGGAGTGTCGGCAAGTGAGAGGATTAGGAGAGAAAGTTTGCTACAAGCAACTCGCAACTTAATCATGGAGAAGATGCAGATTGGGGGACCTTCTATGCGGTTAATAGAGTTATTGGAAGGATTAAAGAAGCAGGATACTGGTGTTAGCGAAGTTCATCTCAATGATCTAAGAAATGCTATAGCTAACTTGGCTACCGAAGGATTTGTTACAATGCACGGTGATAGCGTAAAAAGATCTTAA 3294 0.4599 MSMQEQGLETVVKGSKCEECGNQAKKDCAYSRCRTCCKNKGFKCQTHIRSTWIPVDRRRQKVEHQPLTTNLQQGDIPKRHKHNPYSSLEFKFPAVASSMASFSCVQVRSMDDTVNETAYQTSVNIGGHVFSGFLYDQGPEQSFNAKGDNPFDQQHDLNLRSVSLHTRDGASATMPPLSLTASQEPFFIPHHSFPLASFRPDLTYLSHPKSLKAQIKAHKFWREYTNHSPPYLPVIDHYSPLTALSVSRSLFLLCLNFSEHTKSMASDSSPNFNNGPSSPDDSLSSPIGNTFSSPGSRRRRRSSTPSAFATPSERRSRFASSEATPTAPRSRQSVGGRVPATPTSTTDDVPASSDGGDGYDMDDARPTFVWGTSISVEDVNDAIHRFLRDFREASSSQADDNGLHLHTEGKYEKLIRQVIEVEGDSLDVNARDVFDHDPDLYTKMVRYPLEVLAIFDLVLMNMVSRLKPMSEKHIQTRIFNLKSSTSMRNLNPSDIERMVSLKGMIIRCSSIIPEIREAIFRCLVCGFCCDPIPVERGRITEPTICLREECQSRNSMTLVHNRCRFTDKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDIGKPGDRVEVTGIYRAMTVRVGSTQRTVKSLFKTYIDCLHIKKTHKSRMQVEDAMDIDSGPGRNEDGVFFEEEKVARLKEISKRPDIYEILTKSLAPNIWELDDVKKGLLCQLFGGNALKLASGASFRGDINILLVGDPGTSKSQLLQYIHKLSPRGIYTSGRGSSAVGLTAYVAKDPETGETVLESGALVLSDRGICCIDEFDKMSDNARSMLHEVMEQQTVSIAKAGIIASLNARTSVLACANPSGSRYNPRLSVIDNIHLPPTLLSRFDLIYLILDKADEQTDRRLAKHIVALHFENPENMEHDVLDISTLTDYVSYARKHIHPQLSDEAAEELTRGYVEIRKRGNFPGSSKKVITATPRQIESLIRLSEALARIRFSEWVEKDDVTEAFRLLEVAMQQSATDHSTGTIDMDLITTGVSASERIRRESLLQATRNLIMEKMQIGGPSMRLIELLEGLKKQDTGVSEVHLNDLRNAIANLATEGFVTMHGDSVKRS 1097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00470 1097 FunFam DNA helicase 514 566 - -
Phco9g00470 1097 Gene3D - 487 626 IPR012340 -
Phco9g00470 1097 Gene3D - 1005 1091 IPR036388 -
Phco9g00470 1097 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 697 1012 IPR027417 -
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 1000 1009 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 509 522 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 560 572 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 848 865 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein 4 signature 702 713 IPR008047 GO:0003677|GO:0003678|GO:0005524|GO:0006270|GO:0042555
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein family signature 839 851 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein family signature 787 801 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein family signature 815 828 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein family signature 727 742 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 PRINTS Mini-chromosome maintenance (MCM) protein family signature 866 874 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 FunFam DNA helicase 667 1005 - -
Phco9g00470 1097 Pfam MCM OB domain 487 616 IPR033762 -
Phco9g00470 1097 Pfam MCM P-loop domain 674 896 IPR001208 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 SMART AAA_5 728 878 IPR003593 GO:0016887
Phco9g00470 1097 Gene3D - 514 566 - -
Phco9g00470 1097 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 380 1049 IPR031327 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 NCBIfam LRP1 C-terminal domain 91 139 IPR006511 -
Phco9g00470 1097 Gene3D - 373 481 - -
Phco9g00470 1097 Pfam MCM AAA-lid domain 912 998 IPR041562 -
Phco9g00470 1097 MobiDBLite consensus disorder prediction 264 351 - -
Phco9g00470 1097 Pfam Domain of unknown function (DUF702) 14 140 - -
Phco9g00470 1097 Pfam MCM N-terminal domain 382 480 IPR027925 -
Phco9g00470 1097 MobiDBLite consensus disorder prediction 264 361 - -
Phco9g00470 1097 Gene3D - 670 1004 IPR027417 -
Phco9g00470 1097 SUPERFAMILY Nucleic acid-binding proteins 406 637 IPR012340 -
Phco9g00470 1097 NCBIfam putative zinc finger domain, LRP1 type 16 58 IPR006510 -
Phco9g00470 1097 SMART mcm 483 1000 IPR031327 GO:0003677|GO:0005524|GO:0032508
Phco9g00470 1097 ProSitePatterns MCM family signature. 795 803 IPR018525 GO:0003677|GO:0005524|GO:0006260
Phco9g00470 1097 CDD MCM4 689 998 - -
Phco9g00470 1097 ProSiteProfiles MCM family domain profile. 686 892 IPR001208 GO:0003677|GO:0005524|GO:0032508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00470 Phco-Chr9 3419915 3434818 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco9g00470 MCM 3.1e-100 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00470 9 3419915 3434818 Phco9g00470 9 3419915 3434818 ECH