Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00455 ATGGAAGTTGCGGCGGCCAAAGCGCTCAAACCGAGCCTCCAAACGGAGTTCATTTTCCCGCAAGCAATCTGCGACGAGATTTTGTGTTTCAACGCGAACAACATTGTTGTCGGCGAAGATTTCTCCGTCGACGACCTTCTTGACTTTTCCAACGGCGAATTCCAACTTGGAAAGGATTTCGACGTCTGCGAGGAAGAGGAAGACGAGGAAAAGGACAGCAGCTCCGGTTCCTCGCAGGACCGAACCGAAGACGACAGCAATTCCAATTCCGCCGCCTGCGGCGGCGTCGGCGACTCTGACTCCGTCTTCGCCGGGGAATTATCAGTTCCTGCGGATGATGTGGCGGACCTGGAGTGGGTTTCTCACTTTGTGGACGATTCTCTCCCTGAGCTATCTCTATTGTACCCTGTCCCTGCCGAGAAAACAAGGGTACGGACCGAACCAGAACCTAGACCGGGCGGGGCCCAAACGGCTTCAACGATCCCCCGAAGGCCGAGAACCGGAAAGAGTAGAAAGCCCAACTCTCGCTTGTGGTCTTTTACGGTGTCGCCGCCGTTTTTGCGTTCTCCGGTGTTGGCTGGCGTTGAGTTTGGCGAGCCGACGGCTAAAAAGCAGAAGAAAAAGGCCGAGGCCCAAAGTGGAGCCCAGTTTCAGCGACGGTGCAGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGCCCACTGGGGCCCAAAACACTCTGCAACGCTTGCGGGGTTCGGTTCAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCTTGTAGCCCAACTTTCTCAGGCGAGATTCACTCAAATAGCCACCGAAAGGTGTTGGAGATGAGGCGAAGAAAGGAGACCACAGAACCAGAAACCGGTTCAGACCGGACTCAACTGGTCCCAAGCTGTTGA 915 0.5596 MEVAAAKALKPSLQTEFIFPQAICDEILCFNANNIVVGEDFSVDDLLDFSNGEFQLGKDFDVCEEEEDEEKDSSSGSSQDRTEDDSNSNSAACGGVGDSDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVPAEKTRVRTEPEPRPGGAQTASTIPRRPRTGKSRKPNSRLWSFTVSPPFLRSPVLAGVEFGEPTAKKQKKKAEAQSGAQFQRRCSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGEIHSNSHRKVLEMRRRKETTEPETGSDRTQLVPSC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00455 304 Pfam GATA zinc finger 221 254 IPR000679 GO:0006355|GO:0043565
Phco9g00455 304 ProSitePatterns GATA-type zinc finger domain. 221 246 IPR000679 GO:0006355|GO:0043565
Phco9g00455 304 FunFam GATA transcription factor 210 297 - -
Phco9g00455 304 MobiDBLite consensus disorder prediction 80 95 - -
Phco9g00455 304 MobiDBLite consensus disorder prediction 282 304 - -
Phco9g00455 304 PANTHER GATA TRANSCRIPTION FACTOR 32 293 - -
Phco9g00455 304 SMART GATA_3 215 269 IPR000679 GO:0006355|GO:0043565
Phco9g00455 304 MobiDBLite consensus disorder prediction 141 175 - -
Phco9g00455 304 PIRSF Txn_fac_GATA_plant 1 303 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phco9g00455 304 CDD ZnF_GATA 220 277 IPR000679 GO:0006355|GO:0043565
Phco9g00455 304 Gene3D - 212 290 IPR013088 GO:0006355|GO:0008270
Phco9g00455 304 ProSiteProfiles GATA-type zinc finger domain profile. 219 251 IPR000679 GO:0006355|GO:0043565
Phco9g00455 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 276 - -
Phco9g00455 304 MobiDBLite consensus disorder prediction 63 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00455 Phco-Chr9 3260055 3261095 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco9g00455 GATA 3.4e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00455 9 3260055 3261095 Phco9g00455 9 3260055 3261095 ECH
Phco7g00116 7 766027 767028 Phco9g00455 9 3260055 3261095 ECH