Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00436 ATGATGCAGAGGCTTCACTGTTCTTCGTTTCTGAAACAGCCGTTGAACATGGAGCAACTCAGCATCCCGCAGTTCAATCCCTCGCAAATGCGCGCCAGGCATCAGCATCAGCATCAGTTCGACGGTGGGAACAGTAACAAGCGCGCGGGTATACCACCTTCGCACCCGCATCAGATCCCGCCCATTTCGCCCTACTCTCAGATCCCGGTGACGCGTCAGCAGCAAATGGGGTCGCACAACATTTCCCCTACACCCACCCACACGCGATCACTCTCGCAGCCTTCCTTTTTCTCCCTCGACTCCCTCCCTCCCCTCAGCCCTTCCCCCTTCCGCGACTCCTCCTCTACATCTGTCTCAGAAGCTGCTGACGTGTCCATGGAAGATCGTGACGTCACTTCTCACTCCCTCTTGCCACCCTCACCTTTCGCCAGAACACTCAACACCTCAACCAACAGCAATTTGCCTTTACCCCCTCGCAAAGCGCATAGACGCTCTAACAGTGATATTCCATTTGGGTTTTCCACCGTTTTGCAATCTTCGCCACCGCTTATTCCACTCCGGGGCAGAGAAAACCCCGTTTTGGCGAAACCTGCTCAATTGGTCAAAAGAGAAACACCGTGGGACAGGGGTGTTGATCACAGTAATGTAGAGGGATCCGGGGAGAAGAAATCCCCGGAAGGGGAAGTTGTGGATGATCTTTTCTCTGCTTACATGAATTTAGATAGCTTTGATGCGTTGAACTCTTCTGGAACCGATGATAAAAACGGGACTGAAAATCGCGATGATTTGGATAGTAGAGCGAGTGGGACCAAGACTAATGGTGGTGACAGTAGTGATAATGAAGCTGAGAGTAGTGTTAATGAGAGTGGGGATGGTGTGGTGAGGCAGGGAGGGAGTGAGAAGAGGGAAGGGATGAAGAGGAGTGCGGGTGGGGAGATTGCACCCACCACCAGGCACTATAGGAGTGTCTCCATGGATAGTTTCATTTCGAAGTTGAACTTCGGTGATGAGTCGCCGAAGCTGCCACCGTCGCCGGGGCCGAGAACTGGTTTGATTTCGCCTGCCGGTGGAGTTGATGGCAATTCATCGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTTAGTGGGCCTGAATTGAAGAAAATTATGGCCAATGAAAAACTTGCTGAGATTGCCTTGACCGATCCAAAGCGTGCAAAAAGGATTTTGGCCAACCGGCAATCGGCTGCACGATCCAAAGAGCGGAAGATGCGGTACATATCTGAGCTAGAACATAAGGTTCAGACACTACAGACGGAAGCCACCACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCTGCTGGACTCACTAATCAGAATAGCGAGTTGAAATTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTCCGAGATGCTCTAAATGAGGCTCTTACTGCTGAGGTTCAAAGACTAAAGATTGCTACAGCTGAACTGAGTGGGGATTCACATGGTTCTAGCTGTTTGATTCCTCAACATTCTGTCAACCCTCTGATGTTCCAGCAGCAGCAGCCTCCCACTGCATCCCAACAAAACATTCATCTTCAGCAGCAGCAGCAGCAGCACCAGAATGGTAATGGCAATTCAAATTCCGACATAAAACAATAG 1650 0.5048 MMQRLHCSSFLKQPLNMEQLSIPQFNPSQMRARHQHQHQFDGGNSNKRAGIPPSHPHQIPPISPYSQIPVTRQQQMGSHNISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVTSHSLLPPSPFARTLNTSTNSNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGRENPVLAKPAQLVKRETPWDRGVDHSNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGTENRDDLDSRASGTKTNGGDSSDNEAESSVNESGDGVVRQGGSEKREGMKRSAGGEIAPTTRHYRSVSMDSFISKLNFGDESPKLPPSPGPRTGLISPAGGVDGNSSAFSLEFGNGEFSGPELKKIMANEKLAEIALTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIATAELSGDSHGSSCLIPQHSVNPLMFQQQQPPTASQQNIHLQQQQQQHQNGNGNSNSDIKQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00436 549 SUPERFAMILY Leucine zipper domain 397 448 IPR046347 GO:0003700|GO:0006355
Phco9g00436 549 MobiDBLite consensus disorder prediction 28 167 - -
Phco9g00436 549 MobiDBLite consensus disorder prediction 334 357 - -
Phco9g00436 549 FunFam probable transcription factor PosF21 396 449 - -
Phco9g00436 549 MobiDBLite consensus disorder prediction 246 319 - -
Phco9g00436 549 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 95 545 - -
Phco9g00436 549 CDD bZIP_plant_RF2 398 449 IPR044759 GO:0003700|GO:0006355
Phco9g00436 549 MobiDBLite consensus disorder prediction 195 227 - -
Phco9g00436 549 Pfam bZIP transcription factor 397 455 IPR004827 GO:0003700|GO:0006355
Phco9g00436 549 Gene3D - 397 448 - -
Phco9g00436 549 MobiDBLite consensus disorder prediction 202 227 - -
Phco9g00436 549 SMART brlzneu 393 457 IPR004827 GO:0003700|GO:0006355
Phco9g00436 549 MobiDBLite consensus disorder prediction 515 549 - -
Phco9g00436 549 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 395 458 IPR004827 GO:0003700|GO:0006355
Phco9g00436 549 MobiDBLite consensus disorder prediction 64 122 - -
Phco9g00436 549 MobiDBLite consensus disorder prediction 268 292 - -
Phco9g00436 549 MobiDBLite consensus disorder prediction 138 156 - -
Phco9g00436 549 Coils Coil 413 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00436 Phco-Chr9 3147098 3150328 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco9g00436 bZIP_1 2e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00436 9 3147098 3150328 Phco9g00436 9 3147098 3150328 ECH