Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00419 | ATGGAAGTTAATCTCTCTCTCAACCGACACCGCGCCCTCTCCCTAACCTCCCGCGCTCCCTCCCTCTCCGTTCTCCGCTCACACTTCCTCGCCTCCACTCACTCCCTCCGTCCCCCTCCCACGCCACGCTCCCTTCGCTCCCGGAACAAACGCACCACCGGCCGCAACTTAGGTCTTCTCCGCTTCCACTCCCCGCGCTTCGTCTACAAGGCCTCCCTCCATTCCCACTCCCTCGTTGTCCTCGTCATCGTCGTCACTTTATCCGCCGTTTCCTGGCTTCACTTCACTCTCACCAAGAAAAAAAACGACTCTCTTAACCAGACACGGAGGCATGCGAAGTTCGCGTTATCGCCTCAAGGAACTAACGTAGGGAGTCAGGTCATTGATGGCGAGATTCTTAGTTTTACGGAATTTCAAAGGGATAGCACGCTGAGTGAGATTGGGAAGTTGAAGGATCACCATGGGGAAGAGTACCGGGTCTTTGAGGAAAACGAGATCCACCTCCCGTTTTTGAAATCTTCAGTGGTACAAGAAGTGGCCCTCGCCACTGACATTTCAGAGTCATCTTCTTCTGTTCTTGACTCTGGTGTGAATAATAATAATAATAATAATAATAATAGTTTCAAGGTATTGGATGAGTCTTTTTCATCTGTGGGTTTCTCATCAAGTTCATTACCACCTCTAGAGTTCGCTGAGGAAATGGCTATACAAGTGGAAGGAAGTCAAGATAAAGTTGACTCTGATCCCGAGTTGTCTTTAAATAACGTCGATTCCGAGCATACTGCTTCTTCTGTTCGCGTAAACAACGCACTGGCAACTGTTAGTGGCCATACTAAACAAAAGATTGAACTTGGTTCCATCAACGGTGACGTCCTTTCTGGGGAGTCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGTTAACAAGCCTGCAACTGGTTCTATGACACCACTGAGTGGTTTAAAGCCATTATCTCCCCGTGCTTCTTTTATGAATAAAAAAAGATCGCCCTCAGTGATAGGAAATGTCACACTGAAAGGAACAGGGTTATCTACAGATGTTTCTCTACAAAATGCAGAACATGTCAAAGGAGCAGCTGAAGTTTCCAGTCATAAAAATGGCTACCCTCTGCAACGTGTGAGTAAAAACTTGAGGAGAGGCAGAAGCTCTTCAGGAGACAGGGAAAGGACAAACATGGATTACAATAATCACACAGTTTTGCCCCAGAATACTCACTCAATGAAGATGCATATTGATCTGAAAAACGATCAAATCATGGTGCATGATGGTCAGAAAAATGTTCCTTCGGAGCATCTAAGCAAATATAATAATTTGCTAAACGTTGGGAGGCTACATGAATGTGTAGAATTGCTTAAACATATGGAAACAAAGGGTTTATTAGACATGACTAAGGTTTATCATGCCAAGTTTTTTAACATCTGCAAGAAACGAAAGGCTGTTAAAGAAGCATTTGATTACATTAGGCTCATTCCAAATCCAACGCCGAGTACATTTAACATGCTTATGTCAGTGTGCGCAAGCTCCCAAGATTCGAAAAGGGCTTTCCATGTTTTGCAGCTTCTTAAGAATGCTCAACTAGAACCTGATTGCAAACTTTATACCACTCTGATATTAACTTGTGCAAAGAGTGGGAAAGTTGATCTAATGTTTGAAGTGTTTCACAAGATGGTTAATTCTGGAGTCGAACCTAACGTCCATACCTATGGAGCACTTATTGATGGTTGTGCTAGAGCTGGGCAAGTGGCTAAAGCATTTGGTGCTTATGGAATAATGAGGTCAAAGAATGTGAAGCCAGATCGTGTTGTATTCAATGCACTTATAGCTGCTTGTGCCCAATCAGGAGCTGTAGATCGTGCTTTTGATGTTTTAGCAGAAATGGCAGCTGAAATGCAGCCCATCGACCCTGATCACGTTACTATAGGTGCATTGTTGAAGGCATGCACTAAAGCTGGTCAGGTTGAGCGAGCAAAAGAAGTGTACAAGATGTTACAAAAATATAACATAAAGGGATGTCCAGAAGTTTACACCATTGCCATTAATTCGTGCAGCCAAACTGGGGATTGGGAATTTGCTCTTTCTGTATACAATGACATGACCCAGAAAGGGATCCTCCCAGATGAGATATTTCTGAGTGCACTGATAGATGTTGCTGGTCATGCTAAAGATCTGGATGCTGCCTTTGATGTTCTACAAGAAGCCCGTGAAGGAGGAATACGTATTGGAATAATGTCATATAGCTCATTGATGGGTGCCTGTAGTAATGCAAGAAATTGGCAGAAAGCATTGGAGCTATATGAATATCTTAAATCTCTTAAATTGACAATGACTGTTTCAACAATTAATGCTTTGCTGACTGCACTTTGTGATGGAGATCAATTTCACAAGGCTTTGGAAATTTTTTTTGAAATGAAAGGATTAGGATTGTGCCCAAACAGTATCACTTTCTCGATACTTATAGTGGCAAGTGAGAAAAAGGATGATATGGAGGCTGCTCAAATGCTCCTTTCCCAAGCCAAAAAAGATGGTGTAGTCACTAATCTCATCATATGTCGATGCATAATTGGAATGTGCCTGCGGAGATTTGAGATGGCTTGCATTGTTGGTGAGCCTGTTTTATCTTTTCACTCAGGACGGCCACAAGTTGATAATAAATGGACATCATTGGCCATAATGGTGTTTCGTGAAACAATTGAAGCTGGTCAAAAACCTACAAGTGAAATATTGTCGCAAATTCTGGGATGCCTGCAACTCCCTTATGATACATCTCTGAAAAATAAACTTGTTGAGAATCTAGGAATAAGTGCAGAAACTTCAAGAGGATCAAACCTCTTTTCATTAATGGAGGGATTTGGTGAATACGATCCTCGTGCTTTTTCAATACTTGAGGAATCTGCTTCATATGGACTTGTTCCATCTGTATCATTTAAAATGAGTCCCATTGTTATTGATGTTAAAGAATTGCATGTTTCTACTGCTGAGGTGTACATCATAACAGTTTTGAAAGGTCTCAAGCATAGACTAGCAGCAGGTGCAAGATTGCCCAACATAATCATTTTATTGCCTGTAGAGAAAACAAAAGTTGTGTCTGCGAAGGGGGAGAAGATTATTAACCTTGCTGGAAGAATGGGCAAAGCAATTGGAGCGTTATTGAGGAGGCTTCAGATTCCTCACCAGGGTAATGAATCGAATGGTAAGCTTAGAATTAATGGTGTGGCTCTGAAAATATGGTTTCAGCCTAAACTTGCATCTCCATTTAGCGGAAAACCAGGTGATTGGAGTTCCTCCATGTCACGACTGGGTAAAGGCATTAGTCATCAGCAACGAAACATCCGAATTGGCAATCTGTCTTTGGACTAA | 3378 | 0.4242 | MEVNLSLNRHRALSLTSRAPSLSVLRSHFLASTHSLRPPPTPRSLRSRNKRTTGRNLGLLRFHSPRFVYKASLHSHSLVVLVIVVTLSAVSWLHFTLTKKKNDSLNQTRRHAKFALSPQGTNVGSQVIDGEILSFTEFQRDSTLSEIGKLKDHHGEEYRVFEENEIHLPFLKSSVVQEVALATDISESSSSVLDSGVNNNNNNNNNSFKVLDESFSSVGFSSSSLPPLEFAEEMAIQVEGSQDKVDSDPELSLNNVDSEHTASSVRVNNALATVSGHTKQKIELGSINGDVLSGESVREGLYMFYEVNKPATGSMTPLSGLKPLSPRASFMNKKRSPSVIGNVTLKGTGLSTDVSLQNAEHVKGAAEVSSHKNGYPLQRVSKNLRRGRSSSGDRERTNMDYNNHTVLPQNTHSMKMHIDLKNDQIMVHDGQKNVPSEHLSKYNNLLNVGRLHECVELLKHMETKGLLDMTKVYHAKFFNICKKRKAVKEAFDYIRLIPNPTPSTFNMLMSVCASSQDSKRAFHVLQLLKNAQLEPDCKLYTTLILTCAKSGKVDLMFEVFHKMVNSGVEPNVHTYGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVDRAFDVLAEMAAEMQPIDPDHVTIGALLKACTKAGQVERAKEVYKMLQKYNIKGCPEVYTIAINSCSQTGDWEFALSVYNDMTQKGILPDEIFLSALIDVAGHAKDLDAAFDVLQEAREGGIRIGIMSYSSLMGACSNARNWQKALELYEYLKSLKLTMTVSTINALLTALCDGDQFHKALEIFFEMKGLGLCPNSITFSILIVASEKKDDMEAAQMLLSQAKKDGVVTNLIICRCIIGMCLRRFEMACIVGEPVLSFHSGRPQVDNKWTSLAIMVFRETIEAGQKPTSEILSQILGCLQLPYDTSLKNKLVENLGISAETSRGSNLFSLMEGFGEYDPRAFSILEESASYGLVPSVSFKMSPIVIDVKELHVSTAEVYIITVLKGLKHRLAAGARLPNIIILLPVEKTKVVSAKGEKIINLAGRMGKAIGALLRRLQIPHQGNESNGKLRINGVALKIWFQPKLASPFSGKPGDWSSSMSRLGKGISHQQRNIRIGNLSLD | 1125 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 571 | 605 | IPR002885 | - | |
| Phco9g00419 | 1125 | Gene3D | Tetratricopeptide repeat domain | 775 | 848 | IPR011990 | GO:0005515 | |
| Phco9g00419 | 1125 | MobiDBLite | consensus disorder prediction | 33 | 52 | - | - | |
| Phco9g00419 | 1125 | NCBIfam | pentatricopeptide repeat | 681 | 714 | IPR002885 | - | |
| Phco9g00419 | 1125 | NCBIfam | pentatricopeptide repeat | 573 | 606 | IPR002885 | - | |
| Phco9g00419 | 1125 | NCBIfam | pentatricopeptide repeat | 539 | 572 | IPR002885 | - | |
| Phco9g00419 | 1125 | NCBIfam | pentatricopeptide repeat | 645 | 676 | IPR002885 | - | |
| Phco9g00419 | 1125 | NCBIfam | pentatricopeptide repeat | 786 | 818 | IPR002885 | - | |
| Phco9g00419 | 1125 | NCBIfam | pentatricopeptide repeat | 751 | 780 | IPR002885 | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 606 | 636 | IPR002885 | - | |
| Phco9g00419 | 1125 | Gene3D | Tetratricopeptide repeat domain | 638 | 759 | IPR011990 | GO:0005515 | |
| Phco9g00419 | 1125 | Coils | Coil | 828 | 848 | - | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 678 | 712 | IPR002885 | - | |
| Phco9g00419 | 1125 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic | 450 | 581 | - | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 536 | 570 | IPR002885 | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 783 | 817 | IPR002885 | - | |
| Phco9g00419 | 1125 | Pfam | Pentacotripeptide-repeat region of PRORP | 651 | 793 | IPR033443 | - | |
| Phco9g00419 | 1125 | Pfam | Pentacotripeptide-repeat region of PRORP | 503 | 640 | IPR033443 | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 501 | 535 | IPR002885 | - | |
| Phco9g00419 | 1125 | MobiDBLite | consensus disorder prediction | 37 | 52 | - | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 643 | 677 | IPR002885 | - | |
| Phco9g00419 | 1125 | MobiDBLite | consensus disorder prediction | 364 | 407 | - | - | |
| Phco9g00419 | 1125 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC | 12 | 1124 | - | - | |
| Phco9g00419 | 1125 | Gene3D | Tetratricopeptide repeat domain | 442 | 637 | IPR011990 | GO:0005515 | |
| Phco9g00419 | 1125 | MobiDBLite | consensus disorder prediction | 1095 | 1112 | - | - | |
| Phco9g00419 | 1125 | FunFam | Pentatricopeptide repeat-containing protein MRL1 chloroplastic | 728 | 875 | - | - | |
| Phco9g00419 | 1125 | MobiDBLite | consensus disorder prediction | 1092 | 1112 | - | - | |
| Phco9g00419 | 1125 | MobiDBLite | consensus disorder prediction | 386 | 400 | - | - | |
| Phco9g00419 | 1125 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 748 | 782 | IPR002885 | - | |
| Phco9g00419 | 1125 | FunFam | Pentatricopeptide repeat-containing protein MRL1, chloroplastic isoform X1 | 636 | 727 | - | - |