Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00414 | ATGGCGGAAGAGTACGACGAAGGTGAAGGTGAAGTCGAAGAAGAGTTCTCCGTTTGGAAGAAGAACACTCCTCTGTTGTACGATTTGTTCATTTCTCAGCCTCTTCAATGGCCCTCTCTCACCGTTCACTGGCTTCCTTCCTCTCCCCAATCCCACTTCCACCCTTCCTTCAATCTCCACAAACTCCTCCTTGCCACTCACACTGCCCAGGGCGACCCCAATTTCCTCATGCTCGCCGACGCATCTCTCCCCGCCGACACCTCACAACCCATAGTTGCCACCGACCCTGACCACCCGGTTCTCCCCAAGGTAGAAATTTCCCAAAGGGTTGCTGTTGACGGGGAGGTGAATCGAGCGCGTTGTATGCCGCAGAACCCTTGTATTGTTGCTGCAAAGACATGTAATTCCGAGGTTTATGTGTTTGATTTCAACAAGCAGCGCGGGAGCGAGTTTGCCCCTGATTTGAGGTTAAGGGGTCATGATAAAGAGGGCTATGGTTTGTCTTGGAGCCCTTTTAAGAGTGGGTATCTTTTGAGTGGTTCGCATGACCATAAGATTTGCTTGTGGGATGTGCCTGCTGCTTCTCAAGAGAGTGTGCTTGATGCAATTCATGTTTACGAGGGTCATGAGAGTGCGGTTGAAGATGTGTCCTGGAGTATGAAGGATGAGAATCTGTTTGGATCTGTTGGAGATGACTGTAAATTGGTCATTTGGGACTTACGGACTAACAAACCCCAACAATCAGTCAAACCACATGAAAATGAGGTTAACTTTCTTTCATTTAGTCCATATAATGAATGGGTTTTGGCCACAGCATCTTCAGATACAACTGTTGGTCTCTTTGATACTCGGAAGCTGGCAATTCCACTACATGTTTTAAGTAGCCACAGCGATGAAGTATTCCAGGTTGAGTGGGATCCTAATCACGAGACTGTGTTGGCATCATCTGGCGCTGACAGACGGCTGATGGTTTGGGACCTTAACAGGGTCGGAGATGAGCAGATAGAGGGAGATGGTGAGGGTGGCCCTCCTGAACTACTCTTCTCTCACGGGGGTCACAAAGGAAAAATATCAGATTTTTCGTGGAACAGAAATCAGCCATGGGTTATCTCAAGTGTAGCTGAGGACAATTCTTTCCATGTATGGCAAATGGCAGAGAGCATTTACAATGATGGAGACGATGACAACATGTGGACGGCCGATGATTAA | 1209 | 0.4797 | MAEEYDEGEGEVEEEFSVWKKNTPLLYDLFISQPLQWPSLTVHWLPSSPQSHFHPSFNLHKLLLATHTAQGDPNFLMLADASLPADTSQPIVATDPDHPVLPKVEISQRVAVDGEVNRARCMPQNPCIVAAKTCNSEVYVFDFNKQRGSEFAPDLRLRGHDKEGYGLSWSPFKSGYLLSGSHDHKICLWDVPAASQESVLDAIHVYEGHESAVEDVSWSMKDENLFGSVGDDCKLVIWDLRTNKPQQSVKPHENEVNFLSFSPYNEWVLATASSDTTVGLFDTRKLAIPLHVLSSHSDEVFQVEWDPNHETVLASSGADRRLMVWDLNRVGDEQIEGDGEGGPPELLFSHGGHKGKISDFSWNRNQPWVISSVAEDNSFHVWQMAESIYNDGDDDNMWTADD | 402 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00414 | 402 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 313 | 327 | IPR019775 | - | |
| Phco9g00414 | 402 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 157 | 199 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | PANTHER | WD40 REPEAT FAMILY | 9 | 395 | - | - | |
| Phco9g00414 | 402 | Gene3D | - | 2 | 399 | IPR015943 | GO:0005515 | |
| Phco9g00414 | 402 | PRINTS | G protein beta WD-40 repeat signature | 177 | 191 | IPR020472 | - | |
| Phco9g00414 | 402 | PRINTS | G protein beta WD-40 repeat signature | 313 | 327 | IPR020472 | - | |
| Phco9g00414 | 402 | PRINTS | G protein beta WD-40 repeat signature | 269 | 283 | IPR020472 | - | |
| Phco9g00414 | 402 | FunFam | WD-40 repeat-containing protein MSI1 | 1 | 401 | - | - | |
| Phco9g00414 | 402 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 293 | 328 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 177 | 191 | IPR019775 | - | |
| Phco9g00414 | 402 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 206 | 248 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | Pfam | WD domain, G-beta repeat | 244 | 282 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | Pfam | WD domain, G-beta repeat | 289 | 326 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | Pfam | WD domain, G-beta repeat | 158 | 190 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | Pfam | WD domain, G-beta repeat | 347 | 382 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | Pfam | WD domain, G-beta repeat | 203 | 239 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | SUPERFAMILY | WD40 repeat-like | 114 | 384 | IPR036322 | GO:0005515 | |
| Phco9g00414 | 402 | Pfam | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 14 | 84 | IPR022052 | - | |
| Phco9g00414 | 402 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 206 | 244 | - | - | |
| Phco9g00414 | 402 | SMART | WD40_4 | 242 | 282 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | SMART | WD40_4 | 102 | 142 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | SMART | WD40_4 | 286 | 326 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | SMART | WD40_4 | 343 | 383 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | SMART | WD40_4 | 150 | 190 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | SMART | WD40_4 | 199 | 239 | IPR001680 | GO:0005515 | |
| Phco9g00414 | 402 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 293 | 328 | - | - | |
| Phco9g00414 | 402 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 157 | 191 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00414 | Phco-Chr9 | 2947654 | 2950637 | Dispersed |