Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00413 ATGTTAAGGCAAAACGCAATGGCAGTTGAAAAGAGGTTTGTTTTGGTTGGGATTAGAATTGATTGCCATAGTAGACAGCTTCTCAACTGGGCACTTGTCAAAGTTGCTGAACCAGGGGATTGTGTTGTAGCAGTTCATGTTGTTAAAAATCCAGATCATGTTTCCAAAAGCAATAATCTGATAGATGACTATTTAGAAGTTTATGAAGGGCTATGTTGTGTTAAGAAGGTAGATCTCAGTGGTCAAATCTTCTACGGAAGATCCGTTCGAAACATTCTTGTTAGAGAAGCAAAAAAACATGATGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGGCTTCGCTAAATATTGCGCCAAACAACTACCACTCACCACCAATGTTCTAGCCATCCAAGGCTCAAGGATTGTCTATAGGAGTTGCCCCAACGAACAACAACCAGGTGGTCTTATAATGGATCCAAGACCAAGCTTAACAACCATAGGAAAAAACTCGAGTGACAAAGTAAACCAGTCTACATTTGGTGACTCCACCCTGGAGATTGAGAAATCAGCAACCAAAAATTCCTTAGAATTGAAGGAAGAAGCATTTAACGGATTAGGAAAGGCTAAGTCAAGGTCAATATCCATGTTTGCAGGTGATTCAGCTGAGCAGAAGCCCGGGTGGCCTCTACTCCGAGGAGCCAACTCGGGAACGTCACAAACCCATCATGCAAGGGATATGCCAGTAGTACAATGGGTAATGACCTTACCAGATCGTTCACCGTGTAAAAGTCCCTGGTCTTCTTCCTCCGAGGAAAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCCAAATTTTCTTCAGCTCCATCTGTTGAGCTACCAAATGGCCTAGAGGAGACGCTACGCGTAAATTCAATCGACTGCAAATGCTTCAGCCTTGAAGTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTCCTCCCTGATGGAAAGCCTGTGGCAGTTAAAGTATTGCATTCTTCAAAAGAAGCCTGGAAAGATTTTGCCCTTGAGGTGGAAATAATATCCCCATTGAGGCACAAAAACATTACCCCTCTACTTGGGATTTGCACAGAGAACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCAGCTTAGAGGAAAATCTGCACGGAAAGAGCAAATTGCCATGGGAAATGAGATTTAATGTGGCAGTTAGGATCGCTGAAGCCCTCGATTACATACACAGGGAAGCTTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCTAACATTCTTCTTACCCAAGGGTTTGAACCTCTGTTATCTGATTTCGGACTTGCAACATGGGGACCAACAACTTCATCCTTTTTGACCCAAGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTTTATGCCTTTGGTATTGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCTATAATAGATAGTGGGGACATTAAAGGCTTATTGGACCCAGAATTAGAAGGGAAATATGATGAGATACAATTGCAAAGAATGGTTATGGCAGCATCTTTATGCATCACACGGGCTGCTCGACTTCGTCCTAAACTGAATCAGATACTGAAGATCCTAAAAGGGGATGAGAAAGTTGAATATTTGCTGAACTCGCATGGGAACAATGAGGAGAATTCAGAAAATGGAGAAAACATTGATGATGAAGTGTATCCAAGTTCAAGTGCCGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGACAATACGTCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAACAATGGAGCAGGTCATCAAGTATAAATTTTGAAGCCATTGAAATTGCAGAGAGAGAGAAAAGCGTCAAACAAAAAGTGGAGGGTGGAATCTGTGAAGCTATCGCTTCTTCCTGGTCTGATTTGGGGATTACAGTTCAAATGGACGACGGCGAGCTCGATTTCTCGACGCATGAAGTGTTTTCGAGTCCGAACATGGGGGAGCTTCCGAGCAGTGGTTCCATGGACAGTTTTTTCGACGAGCTTCTCAAGGACACGCACGCCTGCACGCACACCCACACATGCAACCCTCCCGGGCCCGATTTTTCGCACACTCATACGTGCTACCACGTGCACACCAAAATCGTGCCTGCACCTGCTGAGGACCAGGTGGCCACCGATGACACTGCGGAGTCCGCGGAGAAGAAGTCGAAGAAGCGGCCCCTTGGGAACAAAGAAGCGGTTCGAAAGTATCGGGAGAAGAAGAAGGCTCGCGCGGCCTCTCTGGAGGACGAGGTTGTGAAATTGAGGGCTCTCAACCAGCATTTGATGAAGAAGTTGCAGAGCCAGGCTGCTTTGGAAGCTGAAATCGCGAGGCTAAAGTGCTTGCTGGTGGACATAAGGGGCAGGATTGAAGGGGAAATTGGATCCTTTCCGTATCAGAAATCGCCGAATGCGAACCCTCCGGCGGTTAACCTGCCTGGTTCTTATGTGATGAATCCTTGCAACATGCAGTGTGATGATAGGGTGTATTGCGGAGCTGATGGGAGGATCGTGGAGAATGTGTCTTTAAACGGGGAAGAGTTTGGTGGTTGTGAATTTGAGAACCTGCAGTGTCTAGCAAACCAGAATTTGGGGCTCAAGGAGCTTCGTGCATGCGGAGTTGGACAGGCAGGGTCTAATGTAAATTCTTCTGCGTCAAAAAGAAAAGGGGGATCTCGTGCAGCAACAGCTAGTTGA 2895 0.4546 MLRQNAMAVEKRFVLVGIRIDCHSRQLLNWALVKVAEPGDCVVAVHVVKNPDHVSKSNNLIDDYLEVYEGLCCVKKVDLSGQIFYGRSVRNILVREAKKHDALALVVGGRAGFAKYCAKQLPLTTNVLAIQGSRIVYRSCPNEQQPGGLIMDPRPSLTTIGKNSSDKVNQSTFGDSTLEIEKSATKNSLELKEEAFNGLGKAKSRSISMFAGDSAEQKPGWPLLRGANSGTSQTHHARDMPVVQWVMTLPDRSPCKSPWSSSSEENPFERSISDIDDESSKFSSAPSVELPNGLEETLRVNSIDCKCFSLEVLQSCTRQFSSENLVGKGGSNRVYKGVLPDGKPVAVKVLHSSKEAWKDFALEVEIISPLRHKNITPLLGICTENNTLISVYDYLPQGSLEENLHGKSKLPWEMRFNVAVRIAEALDYIHREALKPVIHRDVKSSNILLTQGFEPLLSDFGLATWGPTTSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGIVLLELISGREPISSAACKGQESLVVWAKPIIDSGDIKGLLDPELEGKYDEIQLQRMVMAASLCITRAARLRPKLNQILKILKGDEKVEYLLNSHGNNEENSENGENIDDEVYPSSSAELHLSLALLGVDDDNTSQTSTELSYSEHLKEQWSRSSSINFEAIEIAEREKSVKQKVEGGICEAIASSWSDLGITVQMDDGELDFSTHEVFSSPNMGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPAEDQVATDDTAESAEKKSKKRPLGNKEAVRKYREKKKARAASLEDEVVKLRALNQHLMKKLQSQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKSPNANPPAVNLPGSYVMNPCNMQCDDRVYCGADGRIVENVSLNGEEFGGCEFENLQCLANQNLGLKELRACGVGQAGSNVNSSASKRKGGSRAATAS 964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00413 964 CDD bZIP 790 843 - -
Phco9g00413 964 MobiDBLite consensus disorder prediction 254 268 - -
Phco9g00413 964 ProSiteProfiles Protein kinase domain profile. 320 595 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00413 964 Pfam Basic region leucine zipper 786 841 IPR004827 GO:0003700|GO:0006355
Phco9g00413 964 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 786 852 IPR004827 GO:0003700|GO:0006355
Phco9g00413 964 PANTHER OS08G0249100 PROTEIN 194 603 IPR046958 -
Phco9g00413 964 MobiDBLite consensus disorder prediction 771 806 - -
Phco9g00413 964 SMART brlzneu 784 851 IPR004827 GO:0003700|GO:0006355
Phco9g00413 964 FunFam Putative receptor-like serine/threonine-protein kinase 395 602 - -
Phco9g00413 964 MobiDBLite consensus disorder prediction 254 289 - -
Phco9g00413 964 Gene3D Phosphorylase Kinase; domain 1 288 394 - -
Phco9g00413 964 MobiDBLite consensus disorder prediction 943 964 - -
Phco9g00413 964 Coils Coil 797 831 - -
Phco9g00413 964 CDD USP_Like 14 115 - -
Phco9g00413 964 SUPERFAMILY Leucine zipper domain 788 835 IPR046347 GO:0003700|GO:0006355
Phco9g00413 964 Pfam Protein kinase domain 322 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00413 964 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 14 110 - -
Phco9g00413 964 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 289 394 - -
Phco9g00413 964 ProSitePatterns Serine/Threonine protein kinases active-site signature. 437 449 IPR008271 GO:0004672|GO:0006468
Phco9g00413 964 Gene3D - 775 852 - -
Phco9g00413 964 SMART serkin_6 320 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00413 964 Gene3D Transferase(Phosphotransferase) domain 1 395 601 - -
Phco9g00413 964 SUPERFAMILY Protein kinase-like (PK-like) 302 586 IPR011009 -
Phco9g00413 964 MobiDBLite consensus disorder prediction 780 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00413 Phco-Chr9 2938275 2946048 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Phco9g00413 Pkinase 3.8e-40 CL0016
TF bZIP Phco9g00413 Pkinase 3.8e-40 CL0016