Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00410 ATGTCAACAATAAAATTTGCTTTGATTACCTTGCTTTTCATCACTGTTTCACTGAGCTTTGCGTCCGGTGACAAGGGAGACAAGAAGAAGAAGAGTGATTCTAGCGCAGATGATGGAGGCCAGAAGAAGGAAGTCACATACGATGGCAGGTCACTCATTATCAATGGAAAACGGGAGCTTCTCTTCTCCGGTTCCGTCCATTACCCTCGAAGTCCCCCCGAGTCGTGGCCAATGATTATTGACAAAGCAAGACGTGGAGGTATAAACGTGATTCAAACTTACATCTTCTGGAACATTCATGAGCCTGAGAAAGGCAAGTTCAAAATGGATCCGGAGTATGATTTCGTAAGGTTCATGCAGATCTGTCATGAGAAAGGAATGTATGTTACCCTCAGGCTTGGGCCTTTCATCCAAGCTGAATGGAATCACGGAGGACTTCCGTATTGGCTAAGAGAGGTCCCTGAGATCATATTCCGCTCTAACAATGAACCCTTTAAGGTGCACATGAAAGAATATACAGCAAATGTAATAAAAATATTGCAAGACGCCAAGCTCTTTGCTCCCCAAGGAGGCCCCATCATCTTGGCACAGATCGAGAATGAGTACAACCATATCCAACGTGCTTTTAGAGAGGAAGGAACTAATTACGTCCAATGGGCCGCAAAAATGGCAGTGTCACTGGATGTTGGAGTTCCATGGATCATGTGCAAGCAAACGGATGCTCCTGATCCAGTGATTAATGCATGCAATGGAAGGCACTGTGGTGATACCTTTTCAGGCCCCAACAAACCTAACAAGCCTTCCCTGTGGACTGAAAACTGGACGGCTCAGTATAGGGTGTTTGGAGATCCACCATCCCAAAGATCAGCAGAAGACATTGCCTTTTCTGTTGCCCGCTTCTTCTCTAAGAATGGGTCTTTGGTGAACTACTATATGTACCATGGTGGAACAAATTTTGGTAGAACAAGCTCTGCCTTCAGTACAACCCGATATTACGATGAAGCCCCTCTTGATGAGTTCGGTTTGCAGAGAAATCCAAAATGGTCTCACCTGAGGGATGTGCACAAGGCATTGAACCTATGCAGGCAGGCCCTGTTCGGGGGTAAATCATTCATCACAAAACTAACCCATCATCATGAGATTATAGTTTTCGAGAAGCCAGGTAGTGACTTATGTGCTGCTTTCATCACTAACAACCACACCAAAACACCAATCGACATAAAATTCAGAGGTTCGAATTATCATCTGCCACCACGTTCCATCAGTATCCTCCCTGACTGCAAGACCGTGGTCTTCAACACCCAACATATTGCTTCAGAACATAATGCAAGGAACTTCAAGAAGGCAAAAAATTCAAACAATCTCAAGTGGGAGGTGTTTACTGAGGCCATTCCAAACGCCAAGGATATACCAGCTACTTTAAATGTTCCCGCGGAGCTTTATAACTTGCTTAGAGACACCACCGACTATGCATGGTACACCACCAGCGTGGAATTGGGTCCTGAAGACTTGCCAAGGAAGGATGAGATATCCCCCGTTCTTCGTATTATGAGTCTTGGCCATGCACTGCATGCCTTTGTAAATGGAGAATTTATTGGATCAAATCATGGTACCCATGAAGAGAAAGGTTTTGAATTTCAGAAACCTGTAACCTTTAAGGTTGGAGTTAACCACATAGCTATATTGGCTTCCACTGTTGGACTACCTGACAGTGGAGCATACATGGAGCACAGGTATGCTGGACCCAAGTCTATACTCATCCTTGGTCTTAACTCTGGAAAAATTGATCTGACTTCTAATGGTTGGGGTGCTAAGGTTGGTATCCGAGGTGAGGAACTTGCCATTTTCACTGAGGAGGGATCAAAGAAAGTAGAATGGAAAGAAGCCAAGGGAACTGGAGCTGTTCTCTCGTGGTACAAGACAAATTTTGCAACGCCAGAGGGAAGGGATCCTGTTGCCATAAGGATGACTGGTATGGGGAAGGGAATGATTTGGATAAATGGTAAAAGCATTGGTCGTCATTGGATGAGCTTCCTCTCTCCCCTTGGAACTCCTACTCAGTTAGAGTACCACATCCCACGAATTTACCTCAATCCAAAAGACAACTTGCTTGTTATATTTGAGGAAGAGAAAGCAAACCTAGATAAGGTTGAGATCCAAACTGCTGACAGAGATACAGTATGCAGTATCATCACAGAGAATCACCCCCCCAACATCAATTCATGGGCATGTAAGGGTGGGAAGTTCCAGGCTGTTGTGGACAAACTAGCGCCAGCAGCTTCAATCACATGTCCAAACTACAAAACCATTAAGGCTGTGGAGTTTGCAAGCTTTGGTGATCCTACGGGTGTCTGTGGAGCCTTTGTTATGGGAAAATGTGATGCACCTTCCACCAAGCAGATTGTTGAACAGTATTGCCTGGGAAAACAGTCATGCACGGTTCCAGTTGACCCAGCAACCTTCACCAAGGGCAAAGATGCTTGCCCAGATGTGATAAAGACACTTGCAATCCAAGTGAAGTGTGACTTCTAG 2532 0.4502 MSTIKFALITLLFITVSLSFASGDKGDKKKKSDSSADDGGQKKEVTYDGRSLIINGKRELLFSGSVHYPRSPPESWPMIIDKARRGGINVIQTYIFWNIHEPEKGKFKMDPEYDFVRFMQICHEKGMYVTLRLGPFIQAEWNHGGLPYWLREVPEIIFRSNNEPFKVHMKEYTANVIKILQDAKLFAPQGGPIILAQIENEYNHIQRAFREEGTNYVQWAAKMAVSLDVGVPWIMCKQTDAPDPVINACNGRHCGDTFSGPNKPNKPSLWTENWTAQYRVFGDPPSQRSAEDIAFSVARFFSKNGSLVNYYMYHGGTNFGRTSSAFSTTRYYDEAPLDEFGLQRNPKWSHLRDVHKALNLCRQALFGGKSFITKLTHHHEIIVFEKPGSDLCAAFITNNHTKTPIDIKFRGSNYHLPPRSISILPDCKTVVFNTQHIASEHNARNFKKAKNSNNLKWEVFTEAIPNAKDIPATLNVPAELYNLLRDTTDYAWYTTSVELGPEDLPRKDEISPVLRIMSLGHALHAFVNGEFIGSNHGTHEEKGFEFQKPVTFKVGVNHIAILASTVGLPDSGAYMEHRYAGPKSILILGLNSGKIDLTSNGWGAKVGIRGEELAIFTEEGSKKVEWKEAKGTGAVLSWYKTNFATPEGRDPVAIRMTGMGKGMIWINGKSIGRHWMSFLSPLGTPTQLEYHIPRIYLNPKDNLLVIFEEEKANLDKVEIQTADRDTVCSIITENHPPNINSWACKGGKFQAVVDKLAPAASITCPNYKTIKAVEFASFGDPTGVCGAFVMGKCDAPSTKQIVEQYCLGKQSCTVPVDPATFTKGKDACPDVIKTLAIQVKCDF 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00410 843 ProSiteProfiles SUEL-type lectin domain profile. 758 842 IPR000922 GO:0030246
Phco9g00410 843 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 190 202 IPR019801 GO:0004553|GO:0005975
Phco9g00410 843 PANTHER BETA-GALACTOSIDASE RELATED 36 746 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 SUPERFAMILY (Trans)glycosidases 43 361 IPR017853 -
Phco9g00410 843 Pfam Beta-sandwich domain in beta galactosidase 367 437 IPR041392 -
Phco9g00410 843 MobiDBLite consensus disorder prediction 23 43 - -
Phco9g00410 843 Gene3D - 442 580 - -
Phco9g00410 843 Gene3D Glycosidases 41 361 - -
Phco9g00410 843 FunFam Beta-galactosidase 604 728 - -
Phco9g00410 843 CDD Gal_Rha_Lectin_BGal 750 841 - -
Phco9g00410 843 Gene3D - 606 734 - -
Phco9g00410 843 Gene3D - 755 843 IPR043159 -
Phco9g00410 843 SUPERFAMILY Galactose-binding domain-like 421 582 IPR008979 -
Phco9g00410 843 SUPERFAMILY Galactose-binding domain-like 600 746 IPR008979 -
Phco9g00410 843 FunFam Beta-galactosidase 41 361 - -
Phco9g00410 843 Pfam Galactose binding lectin domain 762 841 IPR000922 GO:0030246
Phco9g00410 843 Pfam Glycosyl hydrolases family 35 51 357 IPR031330 -
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 661 677 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 325 341 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 306 321 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 131 150 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 634 648 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 76 94 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 269 284 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 55 72 IPR001944 GO:0004553|GO:0005975
Phco9g00410 843 PRINTS Glycosyl hydrolase family 35 signature 188 203 IPR001944 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00410 Phco-Chr9 2913297 2917974 Dispersed/Wgd