Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00409 ATGGAAACACGGAGCCGGAAGCGGGCGGAGGCTTCCTCAGCTGCCCCTTCATCCCCTTCCTCTGGTCCCACCACCCGTTCAAGCAAGCGCGCGCGTCTCTCTTCTTCTTCCTCTGCTTCTGCCGCCGCCACTGCCACCGCATCTCTTTCTTCTGTCAACACTCGCTCCCGTGGATCCAGAACTAAGGAACAACCCTTACCTCCGAAGAATCCTCCTCCCATGGACTCTGCCAATGAATCATCTGGTTCTCGACGTGATCGCCGCAGCAAGGACAACTCCGACAAGGGTAAGGAGAAAGAACACGATGTTAGGATTAGGGACAGAGATGCAGACAGAGGGCTGTCATTGAACATGGATGGTGGTGCAGAAGATGATGATAATGACAGTGAAGGTGGTGTGGGGATTTTGCATCAAAATTTGACCTCTGCGAGTAGTGCACTTCAGGGGCTGCTTCGGAAGCTTGGTGCTGGGTTGGATGATCTTCTCCCGTCCTCTGCCATGGGTTCTGCATCTTCCTCTCACCAAAACGGGAGGCTGAAAAAGATCCTTTTTGGGTTGCGAGCGGACGGCGAAGAAGGGCGGCAGGTTGAAGCGTTGACGCAACTCTGTGAAATGCTTTCAATTGGGACTGAAGAGTCGCTTAGTACATTCTCAGTTGATTCGTTTGTTCCTGTGCTTGTGGGTTTGTTGAATCACGAGAACAATCCCGACATCATGCTTCTTGCTGCAAGAGCATTAACCCATCTCTGCGACGTGCTACCTTCATCTTGTGCTGCGGTTGTTCATTATGGTGCAGTTTCAATCTTCTGCGCGAGGTTGCTCACCATAGAATACATGGACTTGGCTGAGCAGTCCCTTCAAGCTCTGAAGAAGATATCTCAGGAGCATCCCACTGCCTGCCTACGTGCTGGTGCTCTTATGGCCGTGCTTTCTTATTTGGACTTCTTTTCTACTGGAGTTCAGCGGGTTGCATTGTCTACTGCTGCAAATATGTGCAAGAAACTTCCTTCAGATGCATCTGATTTTGTGATGGAAGCTGTTCCGCTTCTGACAAACCTTCTTCATTATCATGATGCCAAGGTTCTAGAGCACGCCTCTGTTTGTTTGACTCGAATAGCTGAAGCGTTTGCATCATCTCCTGACAAACTAGATGAATTGTGCAACCATGGACTGGTAACACAAGCTGCCTCCCTCATCTCTAACAGCAGTTCTGGAGGGGGTCAAGCTTCTCTCAGCACACCAACATATACCGGTTTAATCCGACTTCTTTCAACTTGTGCGAGTGGATCCCCTCTTGGAGCTAAAACTTTACTACTACTCGGAATTAGTGGTATTCTTAAAGATATTCTATCTGGTTCTGGAGTTTCTTCTAATGCCTCTGTTTCTCCTGCATTAAGTAGGCCCCCGGAGCAGATATTTGAGATTGTAAACCTGGCAAATGAGCTCCTTCCCCCATTGCCACAAGGAACAATTTCTCTCCCTATCATCTCCAACATGTTTTTGAAAGGGCCCATTGTAAGGAAGTCTCCCGCTGGTAGCTCTGCGAAACAAGATGATTCAAATGGAACTGTTCCTGAGATATCAGCCCGTGAGAAATTATTAAATGACCAGCCTGAACTACTTAGGCAATTTGCCATGGATCTTCTCCCAGTTTTAATACAGATATATGGTTCTAGTGTCAATGGTCCTGTTCGGCACAAATGTCTTTCTGTCATTGGAAAATTGATGTATTTCAGCACAGCAGAGATGATCCAGTCTTTGTTGAGTGTGACCAATATATCAAGTTTCTTAGCTGGGGTCCTAGCATGGAAAGATCCACATGTGTTGGTACCTGCCTTGAAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCTCCAAGATGTTCATTAGAGAAGGTGTTGTGCATGCAGTGGACCAACTTATTTTACCTGGAAATTCAACCAATATCTCTACTCAGGCATCTTCTGCTGAGAAGGATAATGATTCTATATCTGGAGCATCATCTCGCTCTAGGCGTTATCGGCGACGAAGTGGAAGTTCCAATCCTGACGGAAATCCTTTGGACGATTTGAAGGCTCCTGTTTCAGTAAATGTTGGTTCGCCTCCAAGTTCTGTGGAGATTCCAACAGTAAATTCCAGTATCCGTTTGTCTGTTAGTACTGCTGCAAAAGCTTTTAAAGAAAAGTACTTTCCTTCAGATCCTGGGGCTTCTGAAGTGGGTATTACTGATGATCTTTTGAATCTGAAAAATCTTTGCATGAAGTTAAATGCTGGTGCGGATGAACAAAGGACCAATGGAAAGGGGAAATCTAAATCTTCTGGATTTGTTCTGGAAGAGTATTTAATTGGGGTCATAGCTGACATGCTAAAGGAACTTGGCAAAGGTGATGGTGTATCTACTTTTGAATTTATTGGTAGCGGTGTTGTTGCAGCTTTGTTGAATTACTTTTCTTGTGGGTACTTCTCTAAAGATAAATCCTTAGAAACCCACCTTCCAAACCTTCGCCAACAAGCACTTACAAGGTTTAAGTTATTTATAGCTGTTGCTCTACCGTCCTCAACTGAGGTTGGGACTGTGACTCCTATGACTGTCTTGGTCCAGAAGCTTCAAAATGCCTTGTCCTCATTGGAGCGTTTCCCTGTTGTGCTGAGTCATTCATCCAGGTCATCAAGTGGGAGTGCACGCCTCTCCTCTGGACTAAGTGCATTATCTCATCCCTTCAAGTTGCGGCTTTGTCGAGCTCAGGGTGAAAAGTCACTTAGGGATTATTCATCAAATGTTGTATTGGTTGATCCGTTAGCAAGTTTAGCAGCCATTGAGGAATTTCTTTGGTCTCGTGTCCAACGAAGTGAATCTGGTCAGAAGTCCACTGTACCTGCTGGTCATTCTGAATCAGGGACAACTCCTGCAGGAGGTGGTGTATCCTCTCCTTCCACTACCCGTAGACATTCTACTAGATCTAGATCATCTGTTAATATAGGTGACACGTCTAGAAAGGAAATACTTCAAGATAAAAGCACTAGCTCTTCTAAGGGTAAGGGAAAAGCTATATTAAAGCCTGCGCAAGCAGAGTCAAGAGGACCTCAAACAAGGAATGCTACTCGCAGAAGAGCAGCTCTTGATAAAGAGGCTCAAGCAAAGCCTGTAAACGGTGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGCATTGGTGATTGAAGATGATGATATTTCTGATGATGAAGATGATGACCATGAAGATGTTCTGAGGGATGATTCTCTTCCGTTGGTGTGCTCTCCTGACAAAGTACATGATGTGAAATTGGGAGACTTGGCTGAGGAGAGTACTGTTGCTCCTGCAACAAGTGATGGCCAGGCTAATGCTGCCTCAGGTTCTAGCAGCAAAGCTGGTACAGTGAGGGGATCAGACTCTGCTGACTTTAGGAGTGGCTATACATCAAGTTCAAGAGGTGCAATGTCATTTGCTGCTGCTGCCATGGCTGGACTTGGATCTGCCAATAACAGAGGTATCAGGGGTGGAAGAGATCGGCTAGGTCGTCCATTGTTTGGTAGTTCTAATGATCCTCCAAAGTTGATCTTTACTGCTGGCGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAAAGACAGCTTGTGCATGATGAAGATGATGACGAGAGATTTGCTGGCAGTAATGACTATGTATCCAGTGATGGAAGCAGGTTGTGGGGTGATATTTATACTATAACTTATCAGAAGTCAGACAACCAAACAGATAAAGCTACCCCTGGAGGTTCAAGCTCTAATGCATCAAAATCTGGCAAATCTGCATCAAATTCTGGATCTGAAGCCAAGCTACATCAGACATCTGTATTAGATAGCATATTGCAGGGTGAATTGCCCTGTGAATTGGAGAAATCTAATCCTACATACAATATATTGGCATTATTGAGAGTGCTGGAGGGTTTGAACCAACTTGCGTCTCGTTTGAGGGCCCAAGTTGTTACTGATAACTTTGCAGAGGGAAAAGTTTTGGATTTAGATGAGCTAAGTGTTACCATTGGTGCCAGGGTTCCTGCAGAGGAATTTATAAGCAACAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTTGCCTTATGCAGTGGGAGTCTTCCTTCATGGTGTTACCAGCTATCTAAAGCATGCCCTTTCTTGTTTCCTTTTGAGACCCGGAGACAGTACTTCTATTCAACTGCATTTGGGTTATCTCGTGCACTGTATCGCCTTCAGCAGCAACAGGGTGCTGACGGTCATGGATCAACAAATGAAAGAGAGATCAGGGTTGGGAGATTGCAGCGTCAAAAGGTTCGTGTATCTCGTAATCGCATTTTGGATTCTGCTGCCAAAGTGATGGAGTTGTATTCTAGTCAAAAGGCTGTGCTTGAAGTAGAATATTTTGGCGAGGTTGGCACTGGTCTGGGTCCCACCTTGGAGTTCTACACACTTCTCAGTCATGACATACAAAGAGTTGCACTTCAAATGTGGAGATCAGGTTTTTCAGAAAAATATCCAATGGAAATTGATGGAAATGAAAGGAAAATGAAAAGTAGCGAAGGCTCTTTTGCTGGAGATGGAGAACTTGTTCACTCTCCTCTTGGTCTGTTTCCTCGACCTTGGCCTGCAAATGCTGATGCATCAGAGGGTACCCAATTTTTTAAAGTTATTGAATATTTCCGGCTATTAGGTCGTGTAATGGCTAAAGCCCTCCAAGATGGACGCCTATTGGATTTACCACTGTCAGCGGCATTTTATAAGCTTGTTCTCGGTCAAGAGCTTGATTTGCATGACATTCTTTTCATTGATGCGGAGCTTGGGAAAACTTTGCAAGAGTTAAATGCCCTTGTTTGCCGGAAACGTTATATCGAATCTTTTGGTGGTTGCTATACTGATACAATTGGTAATTTACATTTTCGTGGGGCTCCAATTGAAGATCTCTGCTTTGACTTTACACTTCCTGGTTATCCAGAGTACATCTTGAAACCTGGAGATGAAATTGTTGACATCAATAATCTAGAGGAGTACATATCCATGGTGGTCGAGGCAACTGTTAAGGCTGGAATCATGCGTCAGATGGAAGCATTTAGAGCAGGGTTCAATCAGGTTTTTGAAATCTCATCTTTGCAAATTTTTACTCCCCAAGAACTGGATTACTTGCTTTGCGGCCGTAGGGAATTGTGGAAGACTGAGACACTTGCTGATCATATAAAATTTGACCATGGTTATACTGCCAAGAGCCCAGCCATAGTTAATTTACTAGAAATCATGGGAGAATTCACACCAGAACAGCAGCGAGGCTTCTGTCAATTTGTTACTGGTGCACCTAGACTGCCACCTGGTGGACTAGCAGTTCTAAATCCAAAACTAACAATTGTGAGAAAGCTTTCGTCAAGTGCAGCTAATGCTTCATCTAATGGGAACGGGCCTTCAGAATCAGCGGATGATGACTTGCCTAGTGTAATGACGTGTGCAAATTACCTGAAACTTCCTCCTTATTCTAGCAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCAGTGAAGGCCAGGGATCCTTTGATTTATCGTGA 5637 0.4447 METRSRKRAEASSAAPSSPSSGPTTRSSKRARLSSSSSASAAATATASLSSVNTRSRGSRTKEQPLPPKNPPPMDSANESSGSRRDRRSKDNSDKGKEKEHDVRIRDRDADRGLSLNMDGGAEDDDNDSEGGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAMGSASSSHQNGRLKKILFGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHENNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDASDFVMEAVPLLTNLLHYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISNSSSGGGQASLSTPTYTGLIRLLSTCASGSPLGAKTLLLLGISGILKDILSGSGVSSNASVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPIISNMFLKGPIVRKSPAGSSAKQDDSNGTVPEISAREKLLNDQPELLRQFAMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQSLLSVTNISSFLAGVLAWKDPHVLVPALKIAEILMEKLPGTFSKMFIREGVVHAVDQLILPGNSTNISTQASSAEKDNDSISGASSRSRRYRRRSGSSNPDGNPLDDLKAPVSVNVGSPPSSVEIPTVNSSIRLSVSTAAKAFKEKYFPSDPGASEVGITDDLLNLKNLCMKLNAGADEQRTNGKGKSKSSGFVLEEYLIGVIADMLKELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSKDKSLETHLPNLRQQALTRFKLFIAVALPSSTEVGTVTPMTVLVQKLQNALSSLERFPVVLSHSSRSSSGSARLSSGLSALSHPFKLRLCRAQGEKSLRDYSSNVVLVDPLASLAAIEEFLWSRVQRSESGQKSTVPAGHSESGTTPAGGGVSSPSTTRRHSTRSRSSVNIGDTSRKEILQDKSTSSSKGKGKAILKPAQAESRGPQTRNATRRRAALDKEAQAKPVNGDSTSEDEDLDISPVEIDEALVIEDDDISDDEDDDHEDVLRDDSLPLVCSPDKVHDVKLGDLAEESTVAPATSDGQANAASGSSSKAGTVRGSDSADFRSGYTSSSRGAMSFAAAAMAGLGSANNRGIRGGRDRLGRPLFGSSNDPPKLIFTAGGKQLNRHLTIYQAIQRQLVHDEDDDERFAGSNDYVSSDGSRLWGDIYTITYQKSDNQTDKATPGGSSSNASKSGKSASNSGSEAKLHQTSVLDSILQGELPCELEKSNPTYNILALLRVLEGLNQLASRLRAQVVTDNFAEGKVLDLDELSVTIGARVPAEEFISNKLTPKLARQIQDALALCSGSLPSWCYQLSKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGHGSTNEREIRVGRLQRQKVRVSRNRILDSAAKVMELYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHDIQRVALQMWRSGFSEKYPMEIDGNERKMKSSEGSFAGDGELVHSPLGLFPRPWPANADASEGTQFFKVIEYFRLLGRVMAKALQDGRLLDLPLSAAFYKLVLGQELDLHDILFIDAELGKTLQELNALVCRKRYIESFGGCYTDTIGNLHFRGAPIEDLCFDFTLPGYPEYILKPGDEIVDINNLEEYISMVVEATVKAGIMRQMEAFRAGFNQVFEISSLQIFTPQELDYLLCGRRELWKTETLADHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRGFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSSAANASSNGNGPSESADDDLPSVMTCANYLKLPPYSSKEIMYKKLLYAISEGQGSFDLS 1878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00409 1878 MobiDBLite consensus disorder prediction 1 133 - -
Phco9g00409 1878 FunFam E3 ubiquitin-protein ligase UPL3 1398 1639 - -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 652 698 - -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 1122 1154 - -
Phco9g00409 1878 SUPERFAMILY Hect, E3 ligase catalytic domain 1450 1871 IPR035983 GO:0004842
Phco9g00409 1878 MobiDBLite consensus disorder prediction 1176 1199 - -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 80 114 - -
Phco9g00409 1878 Gene3D Hect, E3 ligase catalytic domain 1750 1876 - -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 1058 1092 - -
Phco9g00409 1878 Pfam HECT-domain (ubiquitin-transferase) 1505 1878 IPR000569 GO:0004842
Phco9g00409 1878 FunFam Putative E3 ubiquitin-protein ligase HECTD1 1747 1877 - -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 652 670 - -
Phco9g00409 1878 ProSiteProfiles HECT domain profile. 1578 1878 IPR000569 GO:0004842
Phco9g00409 1878 SMART arm_5 336 374 IPR000225 GO:0005515
Phco9g00409 1878 SMART arm_5 210 251 IPR000225 GO:0005515
Phco9g00409 1878 SMART arm_5 293 333 IPR000225 GO:0005515
Phco9g00409 1878 SUPERFAMILY ARM repeat 179 652 IPR016024 -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 953 1104 - -
Phco9g00409 1878 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 221 249 IPR000225 GO:0005515
Phco9g00409 1878 SMART hect_3 1468 1878 IPR000569 GO:0004842
Phco9g00409 1878 MobiDBLite consensus disorder prediction 1120 1154 - -
Phco9g00409 1878 FunFam HECT ubiquitin protein ligase family protein KAK 172 486 - -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 1261 1291 - -
Phco9g00409 1878 Gene3D - 188 659 IPR011989 -
Phco9g00409 1878 MobiDBLite consensus disorder prediction 10 63 - -
Phco9g00409 1878 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 10 1878 IPR045322 GO:0006511|GO:0061630
Phco9g00409 1878 CDD HECTc 1457 1873 IPR000569 GO:0004842
Phco9g00409 1878 MobiDBLite consensus disorder prediction 953 1000 - -
Phco9g00409 1878 Gene3D Hect, E3 ligase catalytic domains 1397 1640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00409 Phco-Chr9 2900175 2910212 Dispersed/Wgd