Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00408 ATGGGTTTCTTTAGTGCCATTTTGGGGTTTTTCGGATTCGGGGTTGGAATTTCGATTGGTCTTGTGGCCGGCTATTTTCTCTTCATCTACTTTCAACCCACTGATGTTGAGGATCCTGAAATCAAACCATTGGTGGAGGAAGAGCAAGAGACTTTGCAGCGGATGTTTCCAGAGATTCCTCTTTGGATAAAAAGTCCGGATTTCGATCGGCTTGACTGGCTCAACAAATTTTTGGAGTATATGTGGCCTTATCTTGATAAGGCAATTTGCAAGACTGCCAAGAACATTGCAAAACCCATAATTGCTGAGCAGATTCCTAAATATAAAATTGATTCTGTTGAGTTTGAAACACTCACGCTGGGTTCACTGCCGCCAACTTTTCAAGGAATGAAAGTTTATGTCACTGATGAGAAGGAGTTAATTATGGAGCCTTCTGTAAAATGGGCTGGAAACCCTAATGTCACTGTTTCTGTTAAGGCATTTGGGTTGAAAGCAACTGTGCAGGTTGTAGATTTGCAAGTTTTCCTATTGCCTCGCGTTACTTTGAAGCCTTTGGTTCCTAGTTTTCCTTGCTTTGCCAACATAAATGTCTCCCTTATGGAAAAGCCACATGTTGACTTTGGGCTAAAGCTCATAGGGGCTGATCTTATGTCTATTCCAGGCGTCTATAGGATCGTTCAGGATCTTATCAAAGATCAAGTTGCAAACATGTATTTATGGCCCAAAACCTTGGAAGTTCCAATTTTAGATATGTCAAAAGCCTTGAGGAGGCCCGTTGGAATTTTACATGTAAAGGTTCTTCATGCAATGAAGCTAAAGAAGAAAGATTTTCTTGGTGCATCTGACCCTTATGTGAAGCTAAAGCTTACTGATGATAAATTGCCATCGAAAAAGACTAGTGTGAAGCACAAGAACTTAAATCCTGAATGGAATGAAGAATTTAATTTGATCGTGAAAGATCCAGACTCCCAGGTTTTAGAGATTAATGTTTATGACTGGGAGCAGGTTGGGAAACATGACAAGATGGGTATGAATGTGATATCTTTAAAAGATGTTTCCCCTGAAGAGCCTAAAAGTTTTACTCTTGACCTCCTAAAAACCATGGATCCCAATGATGTCCAAAATGAGAAGTCACGTGGGCAGATTGTTGTAGAATTGACATATAAACCCTTCAAGGAGGAGGATTTGGCCAAGGGGTTTGACGAGACGCAGACAGTGCCAAAAGCTCCTGAAGGTACCCCGGAAGGTGGAGGTTTGCTTGTAGTTATAGTCCATGAAGCTCAAGATGTTGAAGGAAAGTATCACACTAATCCACATGTACGACTTACTTTCAGAGGGGAGGAGAAAAAAACTAAGCGTATTAAAAAGAATAGAGATCCAAGATGGGAAGATGAGTTCCATTTTACGGTGGAGGAGCCTCCCACCAATGATAGATTACACGTGGAGGTTATCAGCACGTCATCACGAAACCTGCTCCACCAAAAGGAAACATTGGGTTATATCGACATCAATCTTGGGGATGTTGTTGCCAACAAAAGAATTAATGAGAGGTACCATCTTATAGACTCCAAGAATGGTCGCCTCCAGGTAGAGTTGCAGTGGAGAACCTCACAAGCATGA 1620 0.4148 MGFFSAILGFFGFGVGISIGLVAGYFLFIYFQPTDVEDPEIKPLVEEEQETLQRMFPEIPLWIKSPDFDRLDWLNKFLEYMWPYLDKAICKTAKNIAKPIIAEQIPKYKIDSVEFETLTLGSLPPTFQGMKVYVTDEKELIMEPSVKWAGNPNVTVSVKAFGLKATVQVVDLQVFLLPRVTLKPLVPSFPCFANINVSLMEKPHVDFGLKLIGADLMSIPGVYRIVQDLIKDQVANMYLWPKTLEVPILDMSKALRRPVGILHVKVLHAMKLKKKDFLGASDPYVKLKLTDDKLPSKKTSVKHKNLNPEWNEEFNLIVKDPDSQVLEINVYDWEQVGKHDKMGMNVISLKDVSPEEPKSFTLDLLKTMDPNDVQNEKSRGQIVVELTYKPFKEEDLAKGFDETQTVPKAPEGTPEGGGLLVVIVHEAQDVEGKYHTNPHVRLTFRGEEKKTKRIKKNRDPRWEDEFHFTVEEPPTNDRLHVEVISTSSRNLLHQKETLGYIDINLGDVVANKRINERYHLIDSKNGRLQVELQWRTSQA 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00408 539 Gene3D C2 domain 419 537 IPR035892 -
Phco9g00408 539 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Phco9g00408 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Phco9g00408 539 Pfam C2 domain 260 360 IPR000008 -
Phco9g00408 539 Pfam C2 domain 419 520 IPR000008 -
Phco9g00408 539 SMART C2_3c 419 517 IPR000008 -
Phco9g00408 539 SMART C2_3c 261 361 IPR000008 -
Phco9g00408 539 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 418 535 IPR035892 -
Phco9g00408 539 CDD C2 262 364 - -
Phco9g00408 539 CDD SMP_SYT 60 248 - -
Phco9g00408 539 FunFam Synaptotagmin-2 isoform A 255 410 - -
Phco9g00408 539 Gene3D C2 domain 256 409 IPR035892 -
Phco9g00408 539 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 534 IPR045050 GO:0008289
Phco9g00408 539 ProSiteProfiles C2 domain profile. 240 362 IPR000008 -
Phco9g00408 539 ProSiteProfiles C2 domain profile. 402 518 IPR000008 -
Phco9g00408 539 PRINTS C2 domain signature 277 289 IPR000008 -
Phco9g00408 539 PRINTS C2 domain signature 304 317 IPR000008 -
Phco9g00408 539 PRINTS C2 domain signature 326 334 IPR000008 -
Phco9g00408 539 FunFam Extended synaptotagmin-2 419 536 - -
Phco9g00408 539 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00408 Phco-Chr9 2885605 2892224 Wgd