Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00394 ATGAGTGGAAGAGTGAGTGGGAAGGTGAAATGGTTCAACGATCAGAAGGGGTTTGGGTTCATAACCCCCGACGACGGTTCCGAGGATCTTTTCGTTCATCAATCCCAGATCAAATCTGACGGTTTCCGAAGCCTTGCTGAGGGAGAGTCCGTTGAGTTTGCCATTGAATCTGACACTGACGGACGCGCCAAGGCGGTCGATGTCACCGGTCCTGACGGTGCCAGCGTCCAGGGAACCCGTCGTGGTGGTGGTGATGGCAGCCGAAGCTACGGTGGTGGACGTGGTGGCGGTGGCGGTGGCTACGGCGGTGGCTATGGTGGAGGCGGTGGCTATGGCGGAGGTGGACGAGGTGGAGGTGGCGGCGGCGGTGCTTGCTACAACTGTGGTGAGTCCGGTCACCTAGCTAGGGATTGCTTCCAGGGAGGCGGCGGAGACAGGTACGGCGGCGGCGGAGGTGGTGGAGGTAGATATGGTGGCGGGGGTGGAGGAGGAAGGTATGGAGGAGGCGGTGGAGGCGGCGGTGGAGGCGGCGGTGGAAGCTGCTACAACTGTGGGGAGTCTGGGCACTTTGCAAGAGAATGCCCAACTAATGCTCGTTGA 600 0.61 MSGRVSGKVKWFNDQKGFGFITPDDGSEDLFVHQSQIKSDGFRSLAEGESVEFAIESDTDGRAKAVDVTGPDGASVQGTRRGGGDGSRSYGGGRGGGGGGYGGGYGGGGGYGGGGRGGGGGGGACYNCGESGHLARDCFQGGGGDRYGGGGGGGGRYGGGGGGGRYGGGGGGGGGGGGGSCYNCGESGHFARECPTNAR 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00394 199 ProSiteProfiles Zinc finger CCHC-type profile. 181 195 IPR001878 GO:0003676|GO:0008270
Phco9g00394 199 SMART c2hcfinal6 180 196 IPR001878 GO:0003676|GO:0008270
Phco9g00394 199 SMART c2hcfinal6 124 140 IPR001878 GO:0003676|GO:0008270
Phco9g00394 199 Pfam Zinc knuckle 180 195 IPR001878 GO:0003676|GO:0008270
Phco9g00394 199 Pfam Zinc knuckle 124 140 IPR001878 GO:0003676|GO:0008270
Phco9g00394 199 MobiDBLite consensus disorder prediction 63 93 - -
Phco9g00394 199 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Phco9g00394 199 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Phco9g00394 199 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Phco9g00394 199 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Phco9g00394 199 Gene3D - 1 82 IPR012340 -
Phco9g00394 199 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Phco9g00394 199 PANTHER COLD SHOCK DOMAIN PROTEIN 2 3 197 - -
Phco9g00394 199 SMART csp_8 6 71 IPR011129 GO:0003676
Phco9g00394 199 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Phco9g00394 199 CDD CSP_CDS 5 70 IPR002059 GO:0003676
Phco9g00394 199 SUPERFAMILY Retrovirus zinc finger-like domains 162 197 IPR036875 GO:0003676|GO:0008270
Phco9g00394 199 Gene3D - 176 199 - -
Phco9g00394 199 Gene3D - 118 147 - -
Phco9g00394 199 ProSiteProfiles Zinc finger CCHC-type profile. 125 138 IPR001878 GO:0003676|GO:0008270
Phco9g00394 199 SUPERFAMILY Retrovirus zinc finger-like domains 105 140 IPR036875 GO:0003676|GO:0008270
Phco9g00394 199 SUPERFAMILY Nucleic acid-binding proteins 4 70 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00394 Phco-Chr9 2772967 2773566 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Phco9g00394 CSD 2.7e-27 CL0021