Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00357 ATGAATAGAGGATTCGGTATAAGAGCTTTGCTCATTTCCTTTCGTAACTGTAACCCTCTTCCGCCGCCGCTACTCCCACTCTCCATCCCCTTTCGAGCCGCCAGATCTCTTAATTATCCGTCGACTTCCGTCGCAGCCATGCTCGGAGCTGAGACTCGCGATGTGGAGTGGCCGGCGAAGCGCGTGAGAGACACTTTCATGAGCTTCTTCGAAGACAGGAATCACGTCAACTGGAAGTCCAGCCCCGTCGTCCCCTTCGATGACCCCACTCTTCTCTTCGCCAACGCTGGTATGAACCAGTACAAGCCAATTTATTTGGGTACTGCGGATCCCAACACTGGCTTGAGTAAACTCTCTCGTGCTTACAACACACAGAAGTGCATTCGAGCTGGTGGTAAACACAATGATCTTGATGATGTAGGGAAGGACACCTACCATCACACCTTCTTTGAGATGTTGGGAAATTGGTCCTTTGGGGATTACTTTAAACCAGAAGCCATCAGCTGGGCGTGGGAGCTTCTAACGGAAGTTTACAAGTTACCATCAGATTGCCTATATGCCACATATTTTGGTGGTGATGATAAGGCTGGTCTTGCCCCTGATTTGGAGGCTAGAGATATATGGCTAAAGTTTTTGCCTCCTGGACGAGTGCTTCCTTTTGGCTGTAAAGACAATTTCTGGGAAATGGGTGACACTGGTCCTTGCGGACCTTGCACTGAAATACATTTTGACAGAATTGGTAACCGTGATGCTGCATCATTGGTTAATAACGATGATCCTACTTGCATTGAGATATGGAACGTTGTCTTTATTCAGTTCAATAGGGAGGCTGATGGCTCTCTTAAACCCCTTCTGGCAAAGCATGTCGATACGGGCCTGGGTTTTGAACGATTGATCTCTATACTACAGAATAAAATGAGCAATTATGACACTGACCTGTTCTTGCCAATCTTTGATGGTATTCAGATGGCAACTGGTGCCAGAACTTATTCTGGTAAAGTTGGAGCAGATGATGTAGATAATGTTGACATGGCATATAGGGTTGTTGCAGATCACATCAGAACTCTTTCATTTGCCATTGCTGATGGGTCTCGTCCTGGTAATGATGGCCAGGGATTTTTCAATGGACTTGTAAGTGTGGTGGTGAATGTGATGGGCGATGTTTTCCCTGAGCTAAAACAACACGAAGCGCACATTCGGAATGTAATTGAAGAGGAGGAGGAAAGTTTTGGAAGAACCTTAATTAAGGGTATTGAGAAATTTGAGACAGCTGTTCGACATGAAGCATTTGTCTTGTGGGATACATTTGGATTCCCATTAGATCTCACTCAGCTGATGGCAGAAGAAAAAGGATTAGTTGTTGATATTAAAGGTTTTGATACGGCTATGGAGGCTGCAAGAGAGAGATCTAGAAGTGCTCAAACAAAGCAAGTTGGTGGTGCCATTGTCATGGATGCTGATGCTACCTCAGCATTGCACAAAAGGGGCATATCCCCAACAGATGATAGCTTCAAATATGGTTGGTTCAAGGACCATGAGAGTGTGGTGCAAGCAATATATACTGGTTCTGAGTTTGTTGATACTATTAATACTGGTGATGATATTGGTTTAGTTCTGGAATCTACAAGCTTCTATGCTGAGCAAGGTGGTCAGATTTTTGATACTGGATCACTTGAGGGTATATTTGGTTCATTTCAAGTGCATAACACTCAAGTTTATGGAGGCTTTGTTCTTCACATTGGTAATGGAACTGGTATATCTGTTGGTGACAAAGTAGTATGCAAGGTTGACTATGGAAGACGTGCCATCATAGCCCCTAACCATACCTGCACGCACATGTTAAACTTTGCTCTCAGGGAAGTACTTGGCAATCATGTTGACCAGAAAGGGTCCATTGTTCTACCTGAAAAATTGAGATTTGACTTTTCTCATGGCAAGCCTGTTGACGCTGACAACTTAAGGAGGATTGAGTCAATTGTTAATGAACAAATTAAGGCTGAATTGGATGTAAGTGCAAAGGAGGTAACTCTTGCTGAAGCCAAGCGTATCAATGGTTTACGAGCTGTTTTTGGAGAAGTCTATCCTGATCCTGTTAGAGTTGTGTCAATTGGACAAAAAGTTGAGGATCTTCTTTCTGACCCTGAGAATGAAAAATGGTTATCCATTTCATCAGAATTATGTGGAGGTGAATATTGTAGCTAA 2202 0.4364 MNRGFGIRALLISFRNCNPLPPPLLPLSIPFRAARSLNYPSTSVAAMLGAETRDVEWPAKRVRDTFMSFFEDRNHVNWKSSPVVPFDDPTLLFANAGMNQYKPIYLGTADPNTGLSKLSRAYNTQKCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKPEAISWAWELLTEVYKLPSDCLYATYFGGDDKAGLAPDLEARDIWLKFLPPGRVLPFGCKDNFWEMGDTGPCGPCTEIHFDRIGNRDAASLVNNDDPTCIEIWNVVFIQFNREADGSLKPLLAKHVDTGLGFERLISILQNKMSNYDTDLFLPIFDGIQMATGARTYSGKVGADDVDNVDMAYRVVADHIRTLSFAIADGSRPGNDGQGFFNGLVSVVVNVMGDVFPELKQHEAHIRNVIEEEEESFGRTLIKGIEKFETAVRHEAFVLWDTFGFPLDLTQLMAEEKGLVVDIKGFDTAMEAARERSRSAQTKQVGGAIVMDADATSALHKRGISPTDDSFKYGWFKDHESVVQAIYTGSEFVDTINTGDDIGLVLESTSFYAEQGGQIFDTGSLEGIFGSFQVHNTQVYGGFVLHIGNGTGISVGDKVVCKVDYGRRAIIAPNHTCTHMLNFALREVLGNHVDQKGSIVLPEKLRFDFSHGKPVDADNLRRIESIVNEQIKAELDVSAKEVTLAEAKRINGLRAVFGEVYPDPVRVVSIGQKVEDLLSDPENEKWLSISSELCGGEYCS 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00357 733 FunFam Alanine--tRNA ligase, cytoplasmic 597 733 - -
Phco9g00357 733 Gene3D - 508 596 - -
Phco9g00357 733 Gene3D Bira Bifunctional Protein; Domain 2 58 306 IPR045864 -
Phco9g00357 733 SUPERFAMILY ThrRS/AlaRS common domain 596 708 IPR018163 GO:0000166
Phco9g00357 733 Hamap Alanine--tRNA ligase [alaS]. 57 733 IPR023033 GO:0004813
Phco9g00357 733 PRINTS Alanyl-tRNA synthetase signature 290 303 IPR002318 GO:0000166|GO:0005737
Phco9g00357 733 PRINTS Alanyl-tRNA synthetase signature 347 363 IPR002318 GO:0000166|GO:0005737
Phco9g00357 733 PRINTS Alanyl-tRNA synthetase signature 263 274 IPR002318 GO:0000166|GO:0005737
Phco9g00357 733 PRINTS Alanyl-tRNA synthetase signature 135 146 IPR002318 GO:0000166|GO:0005737
Phco9g00357 733 Gene3D - 597 691 - -
Phco9g00357 733 Pfam tRNA synthetases class II (A) 62 373 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Phco9g00357 733 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 57 733 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Phco9g00357 733 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 310 480 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Phco9g00357 733 CDD AlaRS_core 59 305 - -
Phco9g00357 733 FunFam Alanine--tRNA ligase 499 595 - -
Phco9g00357 733 PANTHER ALANYL-TRNA SYNTHETASE 51 732 - -
Phco9g00357 733 FunFam Alanine--tRNA ligase, cytoplasmic 56 306 - -
Phco9g00357 733 SUPERFAMILY Class II aaRS and biotin synthetases 59 309 IPR045864 -
Phco9g00357 733 SUPERFAMILY Translation proteins 523 596 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00357 Phco-Chr9 2501478 2509971 Proximal