Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00350 ATGGGCAAGTCTAGCAAGAAATCTGCTGTCAAGGTTGACGCTGCTCCAGCTGTTGTTCCACCATCCAAATCCGCCAAACAGGGCAAGAGGCAAGCTGAAGAAGAAATTGAGAAGGTGATTGCAAAAAAACAGAAGATAGAGGAGGTTGCTCAGAAGCAAAAGAAGGAAGCAAAGGTGCAAAAGAAGGAAAGTAGTTCTGACGATTCTTCTTCTGAATCTGAGGATGAGAAACCTGCTGTCAAACCTACCGCCCCTGCAAAAAAGATACCTGCCAAAAATGGTACTGGAAATGCCCCTTCAAAGAAAGGAAAGCCAGCTTCTAGTTCTTCTGAATCATCTGAAGATAGCTCTTCTGCCGAGGAAGAAGTGAGTGCAAAGAAGCCACAGAAAGTAATAGTTGAGAAGCAAAAGAAAGCTGCACCTGTGCCAAAGAAGGAGAGTAGTTCAGATGATGATTCTTCAGAATCTGAAGATGAGAAACCTGTACCAAAAGCTGTTGTTCCTTCAAAAAAGACTCCTGCTAAAAATGGTGCACCAGCAAAGAAAGGCAAGCAAGCTAGCAGCTCCAGTGATTCTGAATCTTCTGATGATGACTCTGAAGATGAGAAACCTGCTACAAAGAATGGTGCAGTAACTGCCCCTGCAAAAGGCAAGCCAGCTGCAGTTGCAGACTCCTCTGATTCATCTGATTCCTCCTCCGACGAAGAAGATGTTCCAAATAAAATATCTGCAACTACAAAGCTGCCTGCATCATCAGTTGCTCCAGCTAAGAAAGTGGAAAGCTCTGATGATGATGATGATTCAAGTGAAGATTCGGATGATGACAATGATGTCAAGCCTGCTGCTGCTGCTGTGTCAAAGCCTTCTGCTGTGTTAAAGAAGAAAGTTGATAGCTCTGATTCTGATGATAGCAGCTCTGAAGAAGACAATAAAAAGACTGCCAAAACGATTTCCAATGCCAAGTCAGTGCCTTTGTCTAAGCAGCCTGTAAAAACGTCAAAGACTAGTGATTCAGATGAAGATGAGTCTTCTGATGGTGAATCTGAAGAGGAAAAGGGAAAGAAGATGGAAATAGATGATGATGATAGTTCTGACGAAAGTGAAAAGCCGCAGAAGAAGGCTGTGAAAAGTGCGAAAGAAAGCAGTGAGAGTTCCGAGGAGGATACTGAGGAAGAAAGCGAGGAGGAACCCTCCAAGACTCCGCAAAAAAGAGCTAGGGAGGTTGAGATGGTTGATGCTTCATCTGGAAAGAAAACTCCCAATACCCCAACTACACCACATGCAGAAAGTGGTGTTTCAAATACTATTTTTGCAGGGAACCTGGCATACAGTGTTGACCGAGCTGATGTTGAAAATTTCTTCAAGGATTGTGGAGAAGTTGTTGATGTTCGTCTTGCTACAGATGAGGATGGAAGGTTCAAAGGATTTGGACATGTGGAGTTTGCAACAGTTGAGGCTGCCCAGAAAGCTCTTGAGTTGAATGGAGAAGAATTGTGCAATCGTCCACTGCGGCTGGATTCTGCCAGGGTTCGGGACAAGAGTTCGTATACTCCCAATAGCAGCAACTGGAACAACTCATCACAAAAAAGTGGAAGAGGCCAGTCTCAAACTCTATTTGTAAGGGGTTTTGATAAATCCCTTGGGGAGGATGAGATAAGAGCTAGTTTGGAAGAACATTTTGGTTCCTGTGGAGAAATTACAAGGGTATCAATTCCCAAAGATTACGAGACTGGTGGTGTCAAGGGGTTTGCTTACATGGACTTTAGTGATGCTGATGGCATGAGCAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGGTATCCCCTCTCTGTGGATGAAGCAAAGCCGAGGGATAACCAAGGCTCTGGTGGTAGAGGCGGTGGTGGAAGAGGTGGTGGTGGTAGATTTGGTGGTGGAAGAGGTGGAAGTGGTGGTAGATTTGGTGGTAGTGGTGGTGGCCGATTTGGTGGCAGAGGTGGTAGTGGTGGCCGTTTTGGTGGTGGAAGAGGCGGTGGTGGAAGGGGTCGTGGACCACCCAGTAGATCCTTCGCCGCGGAAGGGAAAAAGACCAAGTTTGCCGATGAAGACTAG 2094 0.4561 MGKSSKKSAVKVDAAPAVVPPSKSAKQGKRQAEEEIEKVIAKKQKIEEVAQKQKKEAKVQKKESSSDDSSSESEDEKPAVKPTAPAKKIPAKNGTGNAPSKKGKPASSSSESSEDSSSAEEEVSAKKPQKVIVEKQKKAAPVPKKESSSDDDSSESEDEKPVPKAVVPSKKTPAKNGAPAKKGKQASSSSDSESSDDDSEDEKPATKNGAVTAPAKGKPAAVADSSDSSDSSSDEEDVPNKISATTKLPASSVAPAKKVESSDDDDDSSEDSDDDNDVKPAAAAVSKPSAVLKKKVDSSDSDDSSSEEDNKKTAKTISNAKSVPLSKQPVKTSKTSDSDEDESSDGESEEEKGKKMEIDDDDSSDESEKPQKKAVKSAKESSESSEEDTEEESEEEPSKTPQKRAREVEMVDASSGKKTPNTPTTPHAESGVSNTIFAGNLAYSVDRADVENFFKDCGEVVDVRLATDEDGRFKGFGHVEFATVEAAQKALELNGEELCNRPLRLDSARVRDKSSYTPNSSNWNNSSQKSGRGQSQTLFVRGFDKSLGEDEIRASLEEHFGSCGEITRVSIPKDYETGGVKGFAYMDFSDADGMSKALELHETELGGYPLSVDEAKPRDNQGSGGRGGGGRGGGGRFGGGRGGSGGRFGGSGGGRFGGRGGSGGRFGGGRGGGGRGRGPPSRSFAAEGKKTKFADED 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00350 697 CDD RRM2_NUCLs 537 615 IPR034350 -
Phco9g00350 697 MobiDBLite consensus disorder prediction 396 413 - -
Phco9g00350 697 MobiDBLite consensus disorder prediction 1 34 - -
Phco9g00350 697 SUPERFAMILY RNA-binding domain, RBD 523 647 IPR035979 GO:0003676
Phco9g00350 697 MobiDBLite consensus disorder prediction 316 332 - -
Phco9g00350 697 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 434 510 IPR000504 GO:0003723
Phco9g00350 697 MobiDBLite consensus disorder prediction 608 697 - -
Phco9g00350 697 CDD RRM1_NUCLs 435 511 IPR034349 -
Phco9g00350 697 MobiDBLite consensus disorder prediction 119 165 - -
Phco9g00350 697 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 538 610 IPR000504 GO:0003723
Phco9g00350 697 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 436 504 IPR000504 GO:0003723
Phco9g00350 697 SMART rrm1_1 537 613 IPR000504 GO:0003723
Phco9g00350 697 SMART rrm1_1 435 506 IPR000504 GO:0003723
Phco9g00350 697 MobiDBLite consensus disorder prediction 415 432 - -
Phco9g00350 697 MobiDBLite consensus disorder prediction 510 535 - -
Phco9g00350 697 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 46 582 - -
Phco9g00350 697 Coils Coil 22 63 - -
Phco9g00350 697 SUPERFAMILY RNA-binding domain, RBD 429 533 IPR035979 GO:0003676
Phco9g00350 697 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 536 617 IPR000504 GO:0003723
Phco9g00350 697 MobiDBLite consensus disorder prediction 293 315 - -
Phco9g00350 697 FunFam Nucleolin 2 521 662 - -
Phco9g00350 697 Gene3D - 515 652 IPR012677 -
Phco9g00350 697 MobiDBLite consensus disorder prediction 50 82 - -
Phco9g00350 697 MobiDBLite consensus disorder prediction 348 383 - -
Phco9g00350 697 MobiDBLite consensus disorder prediction 50 432 - -
Phco9g00350 697 MobiDBLite consensus disorder prediction 512 535 - -
Phco9g00350 697 MobiDBLite consensus disorder prediction 100 114 - -
Phco9g00350 697 Gene3D - 356 514 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00350 Phco-Chr9 2422485 2427140 Dispersed