Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00338 ATGAGAGGTTTTGTCCGAAGCTCGAACTCGTTGGTGACGAAGTTGTTGTTCCATGGAAGGAACGTTCAATCCCAATGCAGTACTCGTTCGTACAGTCTCATTCCAATGGTGATTGAGCACTCTTCCCGAGGAGAGAGGGCTTACGACATCTTCTCGCGCCTCCTCAAGGAGCGCATTATCTGCATCAATGGACCCATCTCCGACGACACTTCTCACGTCGTCGTTGCGCAGCTCCTCTTCCTCGAATCCGAAAACCCTTCCAAACCCATTAACATGTACATCAACTCCCCCGGTGGTGCCGTCACCGCAGGGCTTGCTATTTATGATACGATGCAGTATATTAAGTCTCCGGTCAATACCGTATGTATGGGCCAAGCTGCATCCATGGGTTCTCTCCTATTGGCTGCGGGTGCCCCGGGCGAGAGGCGGGCTCTTCCAAATGCAACAATCATGATTCACCAGCCTTCTGGTGGTTTTAGTGGCCAGGCAAAGAATATTGCGGTTCACGCCAAGCAGATTGTCAGGGTTTGGGATTCTTTGAATGAGTTGTATGCCAAGCACACGGGGAAGTCGGTTGAGGTCATCCAGTCAAATATGGACGCGGATAACTTCATGACTCCACAGGAGGCCAAAGAGTTTGGGATCATTGATGAGGTTATTGATCAGAGACCTATTGCCTTGGTTTCTGATGCTGTTGGTAATGAAGGGAAAGACAAAGGTTCCAATTAG 729 0.4979 MRGFVRSSNSLVTKLLFHGRNVQSQCSTRSYSLIPMVIEHSSRGERAYDIFSRLLKERIICINGPISDDTSHVVVAQLLFLESENPSKPINMYINSPGGAVTAGLAIYDTMQYIKSPVNTVCMGQAASMGSLLLAAGAPGERRALPNATIMIHQPSGGFSGQAKNIAVHAKQIVRVWDSLNELYAKHTGKSVEVIQSNMDADNFMTPQEAKEFGIIDEVIDQRPIALVSDAVGNEGKDKGSN 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00338 242 CDD S14_ClpP_2 49 219 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 PRINTS Clp protease catalytic subunit P signature 89 109 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 PRINTS Clp protease catalytic subunit P signature 120 137 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 PRINTS Clp protease catalytic subunit P signature 49 64 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 PRINTS Clp protease catalytic subunit P signature 198 217 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 PRINTS Clp protease catalytic subunit P signature 141 160 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 Pfam Clp protease 43 222 IPR023562 -
Phco9g00338 242 Gene3D - 20 227 - -
Phco9g00338 242 ProSitePatterns Endopeptidase Clp serine active site. 120 131 IPR018215 -
Phco9g00338 242 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 33 223 IPR001907 GO:0004176|GO:0004252|GO:0006508
Phco9g00338 242 FunFam ATP-dependent Clp protease proteolytic subunit 32 224 - -
Phco9g00338 242 SUPERFAMILY ClpP/crotonase 41 224 IPR029045 -
Phco9g00338 242 ProSitePatterns Endopeptidase Clp histidine active site. 142 155 IPR033135 -
Phco9g00338 242 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 23 227 IPR023562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00338 Phco-Chr9 2342491 2343983 Dispersed/Transposed