Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00313 ATGTTTTTTTTTCCATTATCTAACTTTTTCACATATCATTTTCTGATATTTCTTCCAAGAATTGGAGTTACCCGTTCTAGTTTTCAACCCAATTATGGGGCTGAAGTTGAACCAATGGATTGTACAGCTGCAAGAAAGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGAGATCGACTCAATGAACAATTTGTAGTGCTGGGCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCATTATCGGTGATACCATTCAGTTGCTGCAGGACCTTACTTCTCAAATTAGTAAACTTAAAGATGAATATACTACACTAAATGAAGAATCTTGCGAGTTGCCTCGAGAGAAAAATGATCTTAGAGAAGAGAAGGCTTCTCTTAAATCGGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCCCCATGGACTGCAATGGATCATTCAGTAATGGTAGCTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTGCTCCAATTACTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCCTCATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAACACATAGCCCCACCTCTTCATCCAGGTTTTCAGTCCCACATGTCCGGTAAACAAGAGTCCAGAAACAAATCAAAGGAGAGCATGGTTGAAAAACATGAGGATTCAAATGATGTCACTGCAGACCAGACTCCCGGGTCTTCTTCAGACCAGGACTTGTCATCTGGACAAAGAAAATCTAGCGAGTTGCCAAGGAAGCAAAGCAGTTGCAATGAAGCGACTTCGTTAGGTTGGTGTTCTTCATCTAGTAGCGTTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGTGAGAAAAAAAGAGAGAAGAATGGGATGGTTCTACGCTAAGAAGAGTGCAGAATGTAAGCAGGAATGCACATTGACAGAGCAGACCATGGACACTGCTTCTCTTTCTCTAAATCTTCACTTATTTGTGATATTTGGCATTGTCCTTAGCTTGTTGTGGCTCTCCCATTACACCACCTACAATGCTCAGCAGAATCACATAGCCCTTTACGTTCAGTTATTCTTGTTTCTTTCGCCCATCCTATTGATACTCTTTTTGCTCTCATATTCCACCTGTGGATGGCTCAACTTTTGCTTCATGAGTTCGAGGCACAGGTCACTCAAAAGATCTGCTGTGTCTCCCTGGAATCTTGCAGCTACTACCGCCACTGTTACCACTTTGTTATTAATCTTTATTTTATTCTAA 1344 0.4144 MFFFPLSNFFTYHFLIFLPRIGVTRSSFQPNYGAEVEPMDCTAARKTQKADREKLRRDRLNEQFVVLGNILDPDRPKNDKATIIGDTIQLLQDLTSQISKLKDEYTTLNEESCELPREKNDLREEKASLKSDIEKLNCQYQQQLRTVSPWTAMDHSVMVAPPSYPYPVPMPIPPAPITMQPYPFYANQHSAIIPNPCSSYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKSKESMVEKHEDSNDVTADQTPGSSSDQDLSSGQRKSSELPRKQSSCNEATSLGWCSSSSSVQESSSSSVVHEHKVRKKERRMGWFYAKKSAECKQECTLTEQTMDTASLSLNLHLFVIFGIVLSLLWLSHYTTYNAQQNHIALYVQLFLFLSPILLILFLLSYSTCGWLNFCFMSSRHRSLKRSAVSPWNLAATTATVTTLLLIFILF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00313 447 MobiDBLite consensus disorder prediction 255 284 - -
Phco9g00313 447 MobiDBLite consensus disorder prediction 220 284 - -
Phco9g00313 447 Coils Coil 84 111 - -
Phco9g00313 447 Pfam Helix-loop-helix DNA-binding domain 45 94 IPR011598 GO:0046983
Phco9g00313 447 CDD bHLH_AtILR3_like 49 123 - -
Phco9g00313 447 PANTHER TRANSCRIPTION FACTOR BHLH121 27 313 IPR044579 GO:0003700|GO:0006879
Phco9g00313 447 Coils Coil 119 146 - -
Phco9g00313 447 MobiDBLite consensus disorder prediction 234 254 - -
Phco9g00313 447 Coils Coil 43 63 - -
Phco9g00313 447 SMART finulus 50 100 IPR011598 GO:0046983
Phco9g00313 447 Gene3D - 42 118 IPR036638 GO:0046983
Phco9g00313 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 94 IPR011598 GO:0046983
Phco9g00313 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 113 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00313 Phco-Chr9 2115357 2120061 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g00313 HLH 1.1e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00313 9 2115357 2120061 Phco9g00313 9 2115357 2120061 ECH