Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00296 ATGAGCACGAAATTTCCTTTTGCATTGAGAAATCGAATTCGTACTCGTATGCTTCTGGACGCGGAGTTGCTTTTGAATTCACAAAATCAAATCAAACAATTTCTTTCTGTACTCACTCTAAAGACGACTTCTGCAATTGACTTCACAAACAAATTAATCAGTGCCACTGCACTAGCTTATCACTACGTAGTCACCATAACCAAGCATATTGATGATATGGCCACCATGGAAGACATGAGCATGAGTGATGAAATTGCACTTCCTGGCTTCCGATTCCATCCAACTGAGGAAGAGCTTCTGGATTTCTATCTTAAGAACATGGTTGTTGGCAAGAAACTCCGTTACGACGTTATTGGTTTCCTCAACATCTATCACCACGATCCCTGGGACTTGCCTGGTTTGGCTAAGGTTGGGGAGAGAGAATGGTACTTCTTCGTGCCGAGGGACAAGAAGCACGGAAGCGGGGGAAGGCCGAACCGGACCACCGAAAAAGGATTTTGGAAAGCGACCGGTTCAGACCGGAAAATAGTTACTTTGTCTGATCCCAAACGCATAATCGGGTTAAGGAAGACCCTGGTTTTCTACATGGGAAGAGCTCCCAGTGGACGCAAAACCGATTGGGTCATGAATGAGTACCGTCTACCTGACAATTGCAAATTACCCAAGGAGATAGTGTTGTGCAAGATATACAGAAAGGCAACATCGTTGAAAGTGCTGGAGGAAAGGGCAGAGAGAGAGATGAAGCAAATGGTGGGTTCCCCTGCTTCTCCTCCTTCCTCCACGGACACCATGTCCTTTAGCAGCCCACAGGAAGAGCCAAACGTGGCCTTGCCTCTGCCCTTGTTGCAGAATGTTCTTAAGAAAGAGTTTGAATCTGAAGAAATGGCAGCATGTGTGTCCACCATGACAGTGCCTAAAGAAGAAAAAGGAAGCAACCAATTGGGTTTGAAAGAGAACAACAAAGGCAGTTGTGGGACATCATCCCTACAAATGCCCTTTGGGAAGGATAACCTTCCTGATCTGCAGCTTCCCATGCTAACAGATTGGACCCAAGACACCTTTTGGGCTCAGTTGAACAGTCCATGGCTCCAAAACTTTACTCCTTCCAACATCTTAAACTTCTACTGA 1128 0.4574 MSTKFPFALRNRIRTRMLLDAELLLNSQNQIKQFLSVLTLKTTSAIDFTNKLISATALAYHYVVTITKHIDDMATMEDMSMSDEIALPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGFLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYMGRAPSGRKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEERAEREMKQMVGSPASPPSSTDTMSFSSPQEEPNVALPLPLLQNVLKKEFESEEMAACVSTMTVPKEEKGSNQLGLKENNKGSCGTSSLQMPFGKDNLPDLQLPMLTDWTQDTFWAQLNSPWLQNFTPSNILNFY 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00296 375 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 85 292 - -
Phco9g00296 375 ProSiteProfiles NAC domain profile. 86 232 IPR003441 GO:0003677|GO:0006355
Phco9g00296 375 MobiDBLite consensus disorder prediction 248 273 - -
Phco9g00296 375 FunFam NAC domain-containing protein 67-like 95 236 - -
Phco9g00296 375 Pfam No apical meristem (NAM) protein 88 214 IPR003441 GO:0003677|GO:0006355
Phco9g00296 375 Gene3D NAC domain 95 236 IPR036093 GO:0003677|GO:0006355
Phco9g00296 375 MobiDBLite consensus disorder prediction 253 272 - -
Phco9g00296 375 SUPERFAMILY NAC domain 74 232 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00296 Phco-Chr9 2028021 2034925 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco9g00296 NAM 1.3e-33 No_clan