Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00288 ATGGAGTTCGTGGGGAAGACTGTTAGGAAAGAGGTGAAGGGGGTTGGGATTATTTCGGGAACAGTGAAATCGTACGACCCTTCCTCTGGTTTTTTCGAGATCCTTTACGAAGAAGGTGATTCGGAGGAGTTGGAGTCCTCTGACGTGGCTTCTCTCTTGCAATTACAGCCGGAGAGTGCCAAGGCCAAGCCTCGAGTTGGTCGGAAACCTAAGAAGCGTCGCCGCGTTGAGCGGCAGGGCGATGCTGGAGCAGGTTCAGGTAATGTTAGAGAGAATTTGGTGGCGAAGGGTAGTGATTTAAGGGGGGTTTTGGATGGGGATGTTTCTTCTGCTTGTGGTGTGGGTTTGGATTTGGACAGTGGTGAGTTAGAGAGAAATTTGGATGGTATAAGTAAGAATAGAGGGAGTCCTGAGGGCAATGTTAATGGGACTGAGAAGGTAAATGGGGTTAGAGAAAGTCTGAGAGAGGAAATTGGCTTAGAAGATAGTTTGAACAAGACTGTATCCGGAAATGTTAGTTGTGTTAAAGATGGACTTGATTTGAATGCTAGGCTTAATCTGGATGAGGATTTAAATTTAAATGATGGGTGTAGTTTGCCTCTTGACACTGAGGATGGTTTGAAGAGAAGAGATTGCATTGATTTAAATTTGGATGTCAGTAATGAAGATGATCTTGGCCCGAATGCGGGTCACTTGGGTTCGGGAGCAGAGGCAATGCAGCGGGAATGTAACTTTGATTTGAATGTGGAGGTAGTGTGTGAAGAAGGTAAAGAAACTCGGTGTGATGATGATGGAAATGGACATTCTGAGGTGGGTAATGTTTTGTTTGGTAAGATGGGGCTGCCCCAAAAGGAAGAGATATATGTTAATAATAGTTCTGTGCAAGATGACAGTATTAATGGTAATTTGAATCACGCCTTTGATGCAGTTAAATTGGAGGGAATTCATGTTTCTTTTGATCATCCATCTAAAGATGGCTCTTGGTGTTTGGTTGAGGAAAATGGAGGAGACAGTCGCAAAGAAAACGCAGGGGCTATTGATTCTCTTCAGATTTCAAGTGCAATATCTGTTGGGGATTCAGATTTTGGGGAGGCTCAGCGAGTTGATTGTCCTTCTGAAGGTGGTATTGCCATAATTCATAAATACCAAGATGATGCAGGAACTCCTTGCAAAGAAGAAAAATTCCAAGATGTTCCAGGAAGTCCACGCAGAAGAGAAAATAGCAGAAGGAAAAGAAGAAAATTATCAGATAATCCAGAAGCCATGCCAGAGACAGTTTTAAGGAGGAGTTCTCGTCGGGCATCAGCTATAAAACAGGTTTCAAGCACCGTTGAAGTGGAAGTGGCTGATGATCCTTTGGTAACCTTGGGAACCGATGCCTTAACAGAAGAAAAGCCTCTAATCCCTGGTTCTCAGAAATCTGAGCAATATAACGATTGTCTGAAATACAAGCAACGCAACAATCATCTTCCAAAGCTCCAATTGCCCCCGTCTTCTACAAACTTGAATTTAGACGATGTTCCTGTTCTTGAACTTTTTTCTATTTATGCCTGTTTCAGATCTTTCAGTACTTTATTATTTTTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCACTGAAGTCTGAAATCCCAAGTATATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATTTGGAATACCTTTCCAATGAGGGTTGCGAATCTGCATCCAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCGGAGTACCTTCTGATTCATGGCTCTGGATTTAAAACTGGTTTTGATCTTAAACGTCTAATGTTCATAACTGATTACTACAAACAACCTGTAATTGTGAAGGTCGAGATTCTCCAGTACCTGTGTGATGAGATGATTGAATCGGAAGCTATAAGGTCAGAGCTTAACAGAAGATCTTTGGTGGCGGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACTCTTGCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCCTGCTTGACTGAGGAGAATGTAGATGACACAACTGACTGGAACAGTGACGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCAGCATTCCACTCACGATGTGTTGGAATTGCCAGTGACAAACTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTCGATGAAGTCACGAAGGTCACTTCGAGGAGCAGACTTATTAGGAATGGATATGGATGGCAGTGTCTATTTCAACAGCTGCGGTTACCTGTTGGTGTCAAGCTCATCTGAAGCAGGGCCATTGTTCTATTATTACCACCAAAATGATATACATGTAGTAATTGAAGCTCTAAAATCTATGGGTCCTTTATATGGAGGCATACTAATGGCTATCTATAAGCATTGGGATATCAGAGCTGACTTGAGTGTGGGGGATAGTGTCTTGAATCAAATTTCCAGCAAGAACATGCAGATGAAGGGAGAATATTCTACTTTGTATACATCTTTGGCACCTTTTACTTCAGAGACATGTTTGAACAAGAAGCAGGCCAATGATCAAGGAAAGTTGGATGAAAATTCAACTATTGACTGTTGTATGCGACTTGGCCAAGACTTTCCCAAAGTTGGGAAATGCCTAGACTCAACGACCACCATAGAAAGTCCTTGTGTTGCTTCAGATGGATCAGCTAATACCACACAGACAAGAACAGGCATCAACAATGTTCAGATGTACGGACTCAATGATTTCAGTAGATGTAATGAATCCTTGAATCAGCCAGGAGTACCAGAAAGACTACATCCCGATTGTTCTTTGACATCTTCCAGCTTGGATGTGGGACATAAAATAAACGTAAGATCTGTAGGTGCTAGCAGTACCCCCTCCCCGGACAGTAAGGATACTTCAGAAGCACCTTGTGGAATTGACTACGTAAACTATTATAGCTTTGCCCGAACAGCTTCATTTGTTGCGCAGGAGTTGATGTGTAAGTTGCCTGAAAAGATGAATAAGATTCTTGCAATGTCTGAAGAAGAATTTATTTCAGATCAAGCAAAGGTCATTATGAAGAAATCTACTAACTTTTGTTGGCCAAGTATTCCCAACCTGGATGCAGCTGCACAAAAAGAAAAATGTGGATGGTGCTTTACTTGTAAAGTTGCTAATGAAGATAGGGATTGTTTGTTTAATTCTGTTGTGAAGCCTGTTTGGGAAGTGTCTAATAGCTCTTTGGTTGGGCTTCAACCCAGGAATATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTTTCTCTTGAGGTTCGGTTACGTGGGCTTTTACTGGGTCCATGGTTGAATCTGCATCAAACTAATCTTTGGCATAAGGATCTTCTGACAACATCTGATTTTCTTCGTGTTAAGCGATTATTGCTTCTTTTAGAATCCAATTTGCGGCCTTTTGCTCTTTCAGCGGATTGGTTAAAGCATGTGGATTCTGTTCCTACAATGGGATCCGCTGTTCATATTGTGGTTAATTCATCACGCACATCTTCCAGACATGGTATTGGAAAGAAAAGGGTCAGGAATTCAGATACTGAAACCAGTTCATCTTCAAACAGTGCTAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTTGAAGGCTTTGCCTCACTCCTTGGTTACCAAGGCTGCTAGACAAGGTGGGTGTAGGAAGATACCAGGAATTTTATATCTTGAGAATTCAGACTTTGCACGAAGAAGCAGATATATTGCCTGGCGAGCAGCTGTTGAGATGTCAACAAGCGTTGAGCAACTTGCTTTACAGATTAGAGAGCTTTATTCAAACATAAGGTGGCTTGATATTGAGAACAATCATCCTTTATGTGTGTTGGACAAGGAATCTAGAAAATCAGTCAGGCTGTTCAAAAAATCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATATCTTATTGATTTTGGAAAGAGAAGGGCTATGCCAGATGTTGTTATTAAACATGGTTCTCTGTTGGAACAATCCTCTAGTGAGAGAAAAAAATATTGGCTAGAGGAGTCTTATGTTCCAATGCATCTTCTAAAGAATTTTGAGGAAAGAAGAATTGTTCGCAAGTCCACTGATAAGAAACTTGGAAAGGTTCTTGAGATTGGTAGAGTAAACAAGAAAGTTCCTCAGGAAAGGGGATTTCCATATCTATTTACAAGATTGGAAAGATCTAATTGTCATCAATGCGCGCACTGCAACAAAGATGTTTCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGGATATTTCCACAAGAGGCATGTCAGGAAATCAGGTGGCACAAGAACTACTGGAAGCACATATTCATGTCACAGATGTCAGGATGGGTTGCATGGAAAGACTAATACCAATAAAAGAAAAGTTGACTCAAAACTGCAGAAGATTCAAGCAAAGAAACGTAAAACTATGCCTTCAGTTTGTAAATCAGTAAGCCTCAAGGGCAACAAAAAGGCATTGAGTAAGGTACGGCAGGTAAGATCTCGAAACAGTAAGAATATCCAATCAAGTGTACCTCTTCGCCGCTCTACTAGGAAGGCCAAATCCCTGTATATGCAAAGTCAAATGAATGGTGGACGTAAAAAAGGAAAGCTTGGTAAAAAGAATGCGGGACGTAAAAAAGGAAAGCAAAGTAAATCCAAGAAGGTGGTCTCTCAGGAGTCCAATGAAACTACTGGTGAATATACGAAGTTAGCAGTTACTACAAGAAGGACAAGAACAAAATTCTGTAGCAGTTATTGGCTTAACGGTCTTCAGTTGTCTCGGAAGCCAAATGACGAACGAGTAATGCTATTTAAAGAGAAGAAGACTATTGTCTCCTCTGAAGAATTTTCTGGCTCTCTTGATTGTCTTAACTGCTGCCTTTGTTGTGGGAATGGATGCACCTTGAATTATATTGCGTGTGAAATGTGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGAGAATGTCAAACAACTTATTGGATTTAGGTGCTATGCTTGTCTTGATAGAACTGCTCCAATCTGTCCTCATATGAAAATTAATGCATTGTCTCGTCCTGAAAGCAATGCTGCAAATGAGTGTGCAGAGGAATTATGTAATCCTGTTTCTCTTCAACCTTTAAGTGAGATCCCTTGCAATTAA 5286 0.413 MEFVGKTVRKEVKGVGIISGTVKSYDPSSGFFEILYEEGDSEELESSDVASLLQLQPESAKAKPRVGRKPKKRRRVERQGDAGAGSGNVRENLVAKGSDLRGVLDGDVSSACGVGLDLDSGELERNLDGISKNRGSPEGNVNGTEKVNGVRESLREEIGLEDSLNKTVSGNVSCVKDGLDLNARLNLDEDLNLNDGCSLPLDTEDGLKRRDCIDLNLDVSNEDDLGPNAGHLGSGAEAMQRECNFDLNVEVVCEEGKETRCDDDGNGHSEVGNVLFGKMGLPQKEEIYVNNSSVQDDSINGNLNHAFDAVKLEGIHVSFDHPSKDGSWCLVEENGGDSRKENAGAIDSLQISSAISVGDSDFGEAQRVDCPSEGGIAIIHKYQDDAGTPCKEEKFQDVPGSPRRRENSRRKRRKLSDNPEAMPETVLRRSSRRASAIKQVSSTVEVEVADDPLVTLGTDALTEEKPLIPGSQKSEQYNDCLKYKQRNNHLPKLQLPPSSTNLNLDDVPVLELFSIYACFRSFSTLLFLSPFELEDLVAALKSEIPSILFDSIHVSILQTLRKHLEYLSNEGCESASNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLKRLMFITDYYKQPVIVKVEILQYLCDEMIESEAIRSELNRRSLVAETDMGFDQNMYFDSCKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDKLPEGDWYCPECGIGKHRASMKSRRSLRGADLLGMDMDGSVYFNSCGYLLVSSSSEAGPLFYYYHQNDIHVVIEALKSMGPLYGGILMAIYKHWDIRADLSVGDSVLNQISSKNMQMKGEYSTLYTSLAPFTSETCLNKKQANDQGKLDENSTIDCCMRLGQDFPKVGKCLDSTTTIESPCVASDGSANTTQTRTGINNVQMYGLNDFSRCNESLNQPGVPERLHPDCSLTSSSLDVGHKINVRSVGASSTPSPDSKDTSEAPCGIDYVNYYSFARTASFVAQELMCKLPEKMNKILAMSEEEFISDQAKVIMKKSTNFCWPSIPNLDAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSSLVGLQPRNIQNGHLRDIICLIFSLEVRLRGLLLGPWLNLHQTNLWHKDLLTTSDFLRVKRLLLLLESNLRPFALSADWLKHVDSVPTMGSAVHIVVNSSRTSSRHGIGKKRVRNSDTETSSSSNSASGLGMYWWRGGRLSRKLFNLKALPHSLVTKAARQGGCRKIPGILYLENSDFARRSRYIAWRAAVEMSTSVEQLALQIRELYSNIRWLDIENNHPLCVLDKESRKSVRLFKKSIVRRKCTEGQSVKYLIDFGKRRAMPDVVIKHGSLLEQSSSERKKYWLEESYVPMHLLKNFEERRIVRKSTDKKLGKVLEIGRVNKKVPQERGFPYLFTRLERSNCHQCAHCNKDVSMRDAVRCLHCKGYFHKRHVRKSGGTRTTGSTYSCHRCQDGLHGKTNTNKRKVDSKLQKIQAKKRKTMPSVCKSVSLKGNKKALSKVRQVRSRNSKNIQSSVPLRRSTRKAKSLYMQSQMNGGRKKGKLGKKNAGRKKGKQSKSKKVVSQESNETTGEYTKLAVTTRRTRTKFCSSYWLNGLQLSRKPNDERVMLFKEKKTIVSSEEFSGSLDCLNCCLCCGNGCTLNYIACEMCGDWFHGDAFGLNVENVKQLIGFRCYACLDRTAPICPHMKINALSRPESNAANECAEELCNPVSLQPLSEIPCN 1761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00288 1761 Pfam PHD-finger 704 745 IPR019787 -
Phco9g00288 1761 ProSiteProfiles Zinc finger PHD-type profile. 701 748 IPR019787 -
Phco9g00288 1761 SMART PHD_3 703 746 IPR001965 -
Phco9g00288 1761 SMART PHD_3 1445 1492 IPR001965 -
Phco9g00288 1761 SMART PHD_3 1670 1716 IPR001965 -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 1543 1573 - -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 388 432 - -
Phco9g00288 1761 ProSiteProfiles DDT domain profile. 506 566 IPR018501 -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 388 404 - -
Phco9g00288 1761 PANTHER PHD FINGER FAMILY PROTEIN 2 1721 - -
Phco9g00288 1761 SUPERFAMILY FYVE/PHD zinc finger 1657 1718 IPR011011 -
Phco9g00288 1761 ProSitePatterns Zinc finger PHD-type signature. 704 745 IPR019786 -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 1202 1226 - -
Phco9g00288 1761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 689 768 IPR013083 -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 1578 1596 - -
Phco9g00288 1761 SUPERFAMILY FYVE/PHD zinc finger 689 750 IPR011011 -
Phco9g00288 1761 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1663 1722 IPR013083 -
Phco9g00288 1761 Pfam DDT domain 510 562 IPR018501 -
Phco9g00288 1761 CDD PHD1_AIRE 703 745 - -
Phco9g00288 1761 SMART testlast3 506 566 IPR018501 -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 47 90 - -
Phco9g00288 1761 MobiDBLite consensus disorder prediction 1532 1605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00288 Phco-Chr9 1938321 1951230 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phco9g00288 DDT 4.4e-11 No_clan