Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00275 ATGGACGACGTTTGCGAGGGGAAGGACTTCACATTCTCGAAGCAGGAGGAGAAGGTTCTAGAACTCTGGTCTCAAATCGATGCATTCAACACTCAGTTAGCTCTCACCAAGGACAAACCGGAGTACATCTTCTACGATGGCCCTCCCTTCGCCACCGGTCTCCCTCACTACGGCCACATCCTTGCCGGCACAATCAAGGACATCGTCACGCGCTACCAGTCCATGACCGGTCACCACGTCACGCGCCGATTCGGCTGGGACTGCCACGGCCTCCCCGTCGAGAACGAGATCGACAAGAAGCTCGGCATCAAGAAACGGGAGGACGTCCTCAAACTTGGAATTGACAAGTACAACGAGGAGTGCCGCAGCATCGTCACGCGCTACGTGTCTGAGTGGGAGAGCGTCATCACGCGCACCGGCCGCTGGATCGACTTCAGGAATGATTACAAGACAATGGACCTCAAGTTCATGGAGTCCGTGTGGTGGGTTTTCTCTCAGCTGTATGCCAAAAACCTTGTCTATAAAGGTTTCAAGGTCATGCCATACAGCACCGGCTGCAAAACTCCGCTCTCTAATTTCGAGGCTGGGCAGAACTATAAGGATGTATCTGATCCTGAAGTATTCATGACGTTTCCAGTCGTGGGTGATCTGCATGGTGCATCTTTTGTAGCATGGACTACAACTCCATGGACTCTTCCTAGCAATCTTGCTCTGTGTATCAATGCCAATTTTACATATGTGAAGGTTCGCAATAAGTACTCTGGTAAAGTTTATATTGTTGCTGAATCTCGTCTGTCTGCAATCAATAACCCTAAGGAGAAACCCAAAGAAGCCGTTGTTAATAGTTCAAATGACGTTTCTAAGAATAAAAATGCCAAGGCCAAGGGAGCTTCAGGTGGAAAAACGGAGAATGTTTTAGATTCTTTTGAAGTAATGGAGAAATTTTCAGGGGCATCATTAGTGGGGACAAAGTATGAACCGTTATTTGATTACTTCAAGGAGTTATCTGATACCGCTTTTAGAGTTGTTGCCGACAATTATGTTACTGATGATAGTGGTACTGGTGTTGTCCATTGCGCCCCTGCTTTTGGTGAAGATGATTTCCGTGTTTGCATTGATAATAAAATCCTTAGCAAGGATAATCTAACTGTAGCTGTTGATGATGATGGCTGCTTTACTGAAAAAATTACCGACTTTAGTGGGTGCTACATCAAACAAGCTGACAAAGATATCATTGAAGCTGTTAAGGCAAAGGGTAGATTGCTTAAGTCTGGAGCTTTTACACATTCTTATCCATACTGCTGGAGATCTGATACCCCTCTCATTTACAGAGCTGTTCCGAGCTGGTTTGTTAGAGTGGAGTTGTTGAAAGAGCAATTGCTGGAAAACAATAAGCAGACGTACTGGGTCCCTGATTTTGTCAAGGACAAGCGATTTCACAATTGGCTGGAAAATGCTAGAGATTGGGCAATTAGTCGTAGTAGATTTTGGGGAACCCCTCTCCCTCTATGGATTAGTGAGGATGAGAAGGAAATAGTTGTCATAGATTCTGTTGCAAAACTTGAAAAGCTTTCCGGTATAAAGGTGTTTGATCTTCATCGTCACAACATAGATCATATTACAATTAAATCTGACAGTGGTCGTGTACTTCACCGTGTTGATGATGTGTTCGACTGCTGGTTTGAGAGTGGATCCATGCCGTATGCGTATATTCATTATCCTTTTGAAAATGTTGAGCTGTTTGAGAAGAATTTTCCTGGCCATTTTGTGGCTGAAGGGTTGGATCAAACACGTGGTTGGTTTTATACCCTTATGGTGCTGGCTACTGCTTTATTTGGCAAGCCTGCATTTAGGAATCTAATATGCAATGGACTTGTGCTAGCTGAGGACGGGAAAAAGATGAGTAAAAGCTTGAAAAATTATCCTTCACCAATGGAAGTTATTAATGATTATGGAGCAGATGCCTTGCGATTGTACCTTATCAACTCTCCAGTTGTGCGTGCTGAGCCACTTCGCTTCAAGAAGGAAGGAGTTTATGGTGTTGTCAGGGATGTTTTCCTTCCTTGGTATAATGCATACAGATTCCTTGTTCAAAATACAAAGAGGCTGGAAGTTGAAGGTCTAGCACCTTTTGTCCCCTTTGATCAGGCCTCACTTTTGAATTCATCGAATGTTCTTGATCAATGGATTAACTCAGCCACCCAAAGCCTTATTCATTTTGTCCGACAGGAAATGGATGGGTACCGCCTTTACACGGTGGTTCCTTATCTTCTGAAGTTTCTTGATAACCTTACCAATATTTATGTAAGGTTCAACCGTAAGAGACTTAAAGGTCGTTCAGGGGAAGAAGACTGTAGGATAGCACTATCAACTCTTTATAATGTCCTTTTGTTGTCTTGTAAAGTGATGGCGCCTTTTACACCTTTCTTCACTGAGGTCCTCTATCAAAATATGCGAAAAGTTTGTAAGGGATCAGACGAAAGCATACACTATTGCAGTTTTCCCACAGAAGAAGGAAAGAGGGGAGAACGAATTGAGCAGAGTGTTTCAAGGATGATGACAATAATTGATCTGGCTAGAAACATTCGTGAACGGCACAACAAGCCTCTTAAGACTCCACTAAGGGAGATGGTTATAGTTCATCCTGATGCAGACTTCCTTGATGACATAAATGGAAAATTGAAGGAGTATGTGCTGGAGGAACTCAATGTACGATCCCTTGTTACATGTAATGATACTTTAAAATATGCATCTTTACGCGCCGAGCCTGAATTTAGTGTTTTAGGTAAAAGACTAGGAAAATCGATGGGCACTGTTGCCAAAGAAGTCAAAGCAATGTCACAGGAAAATATTTTGGCTTTTGAGAATGCTGGAGAAGTTATCATTGCAAATCACTGTTTGAAGCTGACTGATATTAAGGTTCTCCGTGATTTCAAACGACCTGATGGTATGACTGAGAATGAGGTTGATGCTGCTGGAGATGGTGATGTTCTAGTGATATTGGACTTGCGCCCAGATGATTCATTGTTTGAGGCTGGTGCTGCCCGAGAGATTGTTAATAGGATTCAAAAGTTGCGGAAGAAAGTTGCTCTTGAACCAACTGACATGGTGGAGGTTTACTTTGAATCATTAGATGATGACAAATCAGTTTCTCAGAGAGTTTTGCATTCACAGGAATCCTACATCAGAGATGCTATTGGTACTCAATTGCTTCCAAATTCTCTGATGCCTGTACATGCAGTTGTCCTTGGCGAAGAGAGGTTCCTTGGGATAGCTAGCATGTCATTTGGTATCACATTGACGAGACCTGCATTGATGTTTAACAAAAAAGCCATTCTTTCACTGTTTACAGGTGATGCAAAAAGTGCACATAGTTTGCAAACTTACCTGCTATCAAGAGATCATTCGAAGTTGAAGTCTGAGTTTCAAGATGGAAATAGAAAGAAAATTATTGATTCAATTGATCAGCTACCTGCTGTGGAAGTGGTTCTTGGTGGGCATGTTTTTCTCACTGTAGGGGACTATAACCTTGCTGGAAAATCTTGA 3546 0.4281 MDDVCEGKDFTFSKQEEKVLELWSQIDAFNTQLALTKDKPEYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGLPVENEIDKKLGIKKREDVLKLGIDKYNEECRSIVTRYVSEWESVITRTGRWIDFRNDYKTMDLKFMESVWWVFSQLYAKNLVYKGFKVMPYSTGCKTPLSNFEAGQNYKDVSDPEVFMTFPVVGDLHGASFVAWTTTPWTLPSNLALCINANFTYVKVRNKYSGKVYIVAESRLSAINNPKEKPKEAVVNSSNDVSKNKNAKAKGASGGKTENVLDSFEVMEKFSGASLVGTKYEPLFDYFKELSDTAFRVVADNYVTDDSGTGVVHCAPAFGEDDFRVCIDNKILSKDNLTVAVDDDGCFTEKITDFSGCYIKQADKDIIEAVKAKGRLLKSGAFTHSYPYCWRSDTPLIYRAVPSWFVRVELLKEQLLENNKQTYWVPDFVKDKRFHNWLENARDWAISRSRFWGTPLPLWISEDEKEIVVIDSVAKLEKLSGIKVFDLHRHNIDHITIKSDSGRVLHRVDDVFDCWFESGSMPYAYIHYPFENVELFEKNFPGHFVAEGLDQTRGWFYTLMVLATALFGKPAFRNLICNGLVLAEDGKKMSKSLKNYPSPMEVINDYGADALRLYLINSPVVRAEPLRFKKEGVYGVVRDVFLPWYNAYRFLVQNTKRLEVEGLAPFVPFDQASLLNSSNVLDQWINSATQSLIHFVRQEMDGYRLYTVVPYLLKFLDNLTNIYVRFNRKRLKGRSGEEDCRIALSTLYNVLLLSCKVMAPFTPFFTEVLYQNMRKVCKGSDESIHYCSFPTEEGKRGERIEQSVSRMMTIIDLARNIRERHNKPLKTPLREMVIVHPDADFLDDINGKLKEYVLEELNVRSLVTCNDTLKYASLRAEPEFSVLGKRLGKSMGTVAKEVKAMSQENILAFENAGEVIIANHCLKLTDIKVLRDFKRPDGMTENEVDAAGDGDVLVILDLRPDDSLFEAGAAREIVNRIQKLRKKVALEPTDMVEVYFESLDDDKSVSQRVLHSQESYIRDAIGTQLLPNSLMPVHAVVLGEERFLGIASMSFGITLTRPALMFNKKAILSLFTGDAKSAHSLQTYLLSRDHSKLKSEFQDGNRKKIIDSIDQLPAVEVVLGGHVFLTVGDYNLAGKS 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00275 1181 MobiDBLite consensus disorder prediction 276 291 - -
Phco9g00275 1181 Pfam tRNA synthetases class I (I, L, M and V) 308 669 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00275 1181 Pfam tRNA synthetases class I (I, L, M and V) 19 272 IPR002300 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00275 1181 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 688 937 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00275 1181 Gene3D HUPs 401 670 IPR014729 -
Phco9g00275 1181 Gene3D HUPs 4 209 IPR014729 -
Phco9g00275 1181 FunFam Isoleucyl-tRNA synthetase,cytoplasmic 4 210 - -
Phco9g00275 1181 Hamap Isoleucine--tRNA ligase [ileS]. 2 1079 IPR023586 GO:0004822
Phco9g00275 1181 MobiDBLite consensus disorder prediction 272 300 - -
Phco9g00275 1181 Gene3D - 675 867 - -
Phco9g00275 1181 Pfam Domain of unknown function (DUF5915) 896 1063 - -
Phco9g00275 1181 SUPERFAMILY ValRS/IleRS/LeuRS editing domain 201 431 IPR009008 GO:0002161|GO:0006418
Phco9g00275 1181 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 49 60 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00275 1181 CDD Anticodon_Ia_Ile_ABEc 673 860 IPR033709 GO:0000049
Phco9g00275 1181 SUPERFAMILY Nucleotidylyl transferase 10 683 - -
Phco9g00275 1181 PRINTS Isoleucyl-tRNA synthetase signature 552 565 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Phco9g00275 1181 PRINTS Isoleucyl-tRNA synthetase signature 42 53 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Phco9g00275 1181 PRINTS Isoleucyl-tRNA synthetase signature 592 601 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Phco9g00275 1181 PRINTS Isoleucyl-tRNA synthetase signature 223 246 IPR002301 GO:0000166|GO:0004822|GO:0005524|GO:0006428
Phco9g00275 1181 Pfam Anticodon-binding domain of tRNA ligase 727 876 IPR013155 GO:0004812|GO:0006418
Phco9g00275 1181 FunFam Isoleucine--tRNA ligase cytoplasmic 675 867 - -
Phco9g00275 1181 PANTHER SOLEUCYL-TRNA SYNTHETASE 1 1096 IPR023586 GO:0004822
Phco9g00275 1181 CDD IleRS_core 398 673 - -
Phco9g00275 1181 FunFam Isoleucine--tRNA ligase cytoplasmic 396 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00275 Phco-Chr9 1825047 1841733 Dispersed