Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00247 ATGGCTCAAAATGGAAAACCGCCGAAGCTTCCCGTCGAAGGAAAGCGCAACATCCTAATCACCAGTGCCCTGCCTTATGTCAACAACGTTCCTCACCTCGGAAACATTATTGGATGCGTTCTGAGTGCCGATGTGTTCGCTCGCTACTGTCGGATTCGGGGTTACAACACTATTTACATCTGCGGTACTGATGAGTATGGAACCGCGACAGAGACTAAAGCCATGGAAGAAAAATGCTCTCCCAAGGAGATTTGTGACAAATACTATGCTATACATAAGGAGGTGTATAATTGGTTCAACATAAGTTTTGACGAATTTGGGAGGACATCATCCCCTCAGCAAACTGAAGTTTGTCATGAAATTTTTAAAAAAATATTTGACAACAAGTGGCTCTCCGAAAACACAATGCAGCAGCTTTATTGTGACACGTGTGAAAGGTTCTTAGCTGATAGGCTTGTGGAGGGAACCTGCCCGACTCAGGGGTGTGAGTATGATTCTGCTCGAGGAGACCAATGTGAGAAGTGTGGAAAACTTCTGAATCCAACAGAATTGAAAAATCCCAGATGCAAGGTTTGTCAGAAAACGCCTCGTATTCGGGATACAGACCATTTGTTTCTTGAACTCCCTTTATTGAAGGACAGATTGGAAAAATACATCACTGAGATGTCTGTGGTTGGTGGATGGAGTCAGAATGCCATCCAAACGACAAATTCATGGCTTAGAGAAGGACTAAAGCAACGTTGTATTACGAGGGATCTAAAGTGGGGGGTTCCCGTTCCACATGAAAAATACAAGGACAAGGTTTTCTATGTGTGGTTTGATGCACCAATTGGATATGTGTCAATCACTTCGTGTTACACACATGAATGGGAGAAATGGTGGAAAAACCCAGAGAATGTGGAGCTGTATCAGTTTATGGGCAAGGACAATGTGCCATTCCACACTGTGATGTTTCCATCTACTCTTCTTGGAACTGGTGAGAATTGGACTTTAATGAAGACTATCAGTGTTACCGAATACTTAAATTATGAAGCAGGGAAGTTTTCCAAGAGCAAAGGTATTGGAGTATTTGGTAATGATGTGAAAGATACAGAGATTCCGGTTGAAGTATGGAGATATTACTTGCTCACAAATAGGCCCGAGGTATCAGATACATTATTTACATGGCCTGATTTGCAAGCTAAATTAAATGGTGAATTACTGAATAATTTGGGCAACTTCATCAACCGAGTTTTGAGTTTTATTGCCAAACCTGCAGGTCAAGGATATGATTCCATTATACCCTCCATTCCTGATGATGTAAGTGGTGACTCCCATAATCTGACCAAAAAATTAGCTGATAAAGTTGCTGCATATATAGACCAATACATAGAAGCAATGGAGAAGGTTAAACTAAAGCAAGGATTGAAAACTGCAATGAGCATATCTAGCGAGGGAAATGCATATCTCCAGGAATCTCAATTCTGGCGCCTTTATAAGGAAAACAAATCTCTCTGCGCCCTTGTCATGAAAACTGCAGTTGGGATTGTATACCTTCTGGCATGTTTACTAGAACCTTTTATCCCATCTTTCACCCTCGAAGTATTTAAGCAACTAAATTTGCCTGCGGAGATACATGTCTCACTTTGTGCCGATAAAGGAGATGTTGACAGGGTAAAAAGACTTTGGGATATCGTAAGTTCTGGTCATAAACTTGGAACACCCAAGCCATTGTTCAAGGAGCTGAAAGATGAAGAAGTGGATTTCTACAGGAAGAAGTTCGCTGGAAGTCAGGCTGATAGGATTGTGCGAGCTGAGGTTGAAGCTGACAAGGTTGCTGAGCAACTGAAGAAAACAAAAGTTTCAGATGGCAATGGAAAGAAAAAACCAGCAAAATCATCAAATGAAGCAAAAAACAAAGCAGCCCCTGAACCAGATATTACCATCACTAGGCTTGATATCCGGGTTGGCTTGATAACAAAAGCTCAAAAACATCCTGATGCAGATGCACTGTATGTTGAAGAGATCGATGTTGGTGAAGAACAGACTAGAACTGTTGTCAGTGGGCTTGTCAAATACATACCACTTGATGAAATGCAGAACCGAAAGGTCTGTGTTCTTTGTAACCTAAAGCCAGCATCCATGAGAGGCATTAAATCCCAAGCAATGGTTCTTGCTGCTTCAAATGATGATCATTCCAAGGTTGAGTTGGTTGAGCCTCCCAGTTCTGCTAATGTTGGAGAAAGAATTACATTCCCAGGAAATGAAGGTAATCCTGATGAACTCTTAAACCCAAAGAAGAAAGTTTGGGAGACTTTGCAAGTTGATCTTCATACTAACGAGGATCTGGTAGCATGCTACAAAGATGTTCCACTCACCACCTCAGCTGGCGTTTGCAAGGTTTCATCGATTAGCTGTGGATCCATAAAGTAG 2412 0.4171 MAQNGKPPKLPVEGKRNILITSALPYVNNVPHLGNIIGCVLSADVFARYCRIRGYNTIYICGTDEYGTATETKAMEEKCSPKEICDKYYAIHKEVYNWFNISFDEFGRTSSPQQTEVCHEIFKKIFDNKWLSENTMQQLYCDTCERFLADRLVEGTCPTQGCEYDSARGDQCEKCGKLLNPTELKNPRCKVCQKTPRIRDTDHLFLELPLLKDRLEKYITEMSVVGGWSQNAIQTTNSWLREGLKQRCITRDLKWGVPVPHEKYKDKVFYVWFDAPIGYVSITSCYTHEWEKWWKNPENVELYQFMGKDNVPFHTVMFPSTLLGTGENWTLMKTISVTEYLNYEAGKFSKSKGIGVFGNDVKDTEIPVEVWRYYLLTNRPEVSDTLFTWPDLQAKLNGELLNNLGNFINRVLSFIAKPAGQGYDSIIPSIPDDVSGDSHNLTKKLADKVAAYIDQYIEAMEKVKLKQGLKTAMSISSEGNAYLQESQFWRLYKENKSLCALVMKTAVGIVYLLACLLEPFIPSFTLEVFKQLNLPAEIHVSLCADKGDVDRVKRLWDIVSSGHKLGTPKPLFKELKDEEVDFYRKKFAGSQADRIVRAEVEADKVAEQLKKTKVSDGNGKKKPAKSSNEAKNKAAPEPDITITRLDIRVGLITKAQKHPDADALYVEEIDVGEEQTRTVVSGLVKYIPLDEMQNRKVCVLCNLKPASMRGIKSQAMVLAASNDDHSKVELVEPPSSANVGERITFPGNEGNPDELLNPKKKVWETLQVDLHTNEDLVACYKDVPLTTSAGVCKVSSISCGSIK 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00247 803 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 404 588 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00247 803 PANTHER METHIONINE--TRNA LIGASE 5 801 IPR023458 GO:0004825
Phco9g00247 803 CDD MetRS_core 17 387 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 SUPERFAMILY Nucleotidylyl transferase 15 397 - -
Phco9g00247 803 Gene3D HUPs 17 400 IPR014729 -
Phco9g00247 803 Pfam Anticodon binding domain of methionyl tRNA ligase 438 591 IPR041872 -
Phco9g00247 803 CDD Anticodon_Ia_Met 396 532 IPR041872 -
Phco9g00247 803 FunFam Methionine--tRNA ligase cytoplasmic 401 574 - -
Phco9g00247 803 Hamap Methionine--tRNA ligase [metG]. 16 586 IPR023458 GO:0004825
Phco9g00247 803 NCBIfam methionine--tRNA ligase 18 539 IPR014758 GO:0000166|GO:0004825|GO:0005524|GO:0006431
Phco9g00247 803 SUPERFAMILY Methionyl-tRNA synthetase (MetRS), Zn-domain 153 189 IPR029038 -
Phco9g00247 803 Pfam Putative tRNA binding domain 647 741 IPR002547 GO:0000049
Phco9g00247 803 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 25 36 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00247 803 FunFam tyrosine--tRNA ligase, cytoplasmic isoform X2 640 803 - -
Phco9g00247 803 FunFam Methionine--tRNA ligase 153 189 - -
Phco9g00247 803 MobiDBLite consensus disorder prediction 611 637 - -
Phco9g00247 803 Gene3D - 153 189 IPR029038 -
Phco9g00247 803 Gene3D - 640 803 IPR012340 -
Phco9g00247 803 PRINTS Methionyl-tRNA synthetase signature 53 67 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 PRINTS Methionyl-tRNA synthetase signature 269 280 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 PRINTS Methionyl-tRNA synthetase signature 304 319 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 PRINTS Methionyl-tRNA synthetase signature 101 112 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 PRINTS Methionyl-tRNA synthetase signature 20 33 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 PRINTS Methionyl-tRNA synthetase signature 399 410 IPR033911 GO:0004825|GO:0006431
Phco9g00247 803 Pfam tRNA synthetases class I (M) 18 412 IPR015413 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00247 803 Gene3D - 401 574 - -
Phco9g00247 803 ProSiteProfiles tRNA-binding domain profile. 641 744 IPR002547 GO:0000049
Phco9g00247 803 MobiDBLite consensus disorder prediction 611 628 - -
Phco9g00247 803 CDD tRNA_bind_EMAP-II_like 640 744 - -
Phco9g00247 803 SUPERFAMILY Nucleic acid-binding proteins 643 787 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00247 Phco-Chr9 1628369 1635231 Dispersed