Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00243 ATGGGAGATGAAGACGACGACGAGGTTCTCGGTTGCGCCACCACCGCTTCCGGTCAATCCGCCTCCACCAACAGCTTGCCACCTCCCGCCGACAACACACTGCTCAAATTGAACCATCTCGACTTACACGCTGATGATGCCGGATCACAAGCCTCTCTTGCTGGCAAGAAGAAAAAGAGAGGCCAACGCGCAGTTGGACCTGATAAGAGTGGACGAGGTCTCCGCCAATTTAGCATGAAAGTGTGTGAGAAGGTAGAAAACAGGGGAAGAACAACTTACAATGAGGTGGCGGATGAGCTTGTTGCTGAATTTTCTGATCCAAGCACTAGTGAATTAACCCCTGACCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCGATGGACATTATTTCTAAGGATAAAAAGGAAATCCAATGGAAGGGACTTCCGCGTACTAGTGTGAATGATATTGAAGAATTAAAGACAGAGCGTCTAGGGCTCAGGAATAGAATTGAAAAGAAAACAGCTTATCTGCAGGAGCTCGAGGAGCAATTCGTAGGCCTTCAGAACCTTATTCAACGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTGTCTTTGCCTTTTATTCTGGTACAGACGCGTCCTCATGCAACTGTAGAAGTGGAAATATCAGAAGATATGCAGCTTGTTCATTTTGATTTCAATAGTACTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGCGACAGACCACAGGAAGAAAATACGACCCACAATTTTACCGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGCCAACCACAGGCTCCTCCTACAAATCTAAAAGTGTCAAATAGGCCTCCAACATCACCTCCTCTCCCTGGCATATTAAAGGCAAGGAGAAATTGGCTTCAGTTGGTTGACCGTCATAATAGTTATTCATCAGTACAGCCAAATCATTCTGTAGGTTAG 1020 0.4539 MGDEDDDEVLGCATTASGQSASTNSLPPPADNTLLKLNHLDLHADDAGSQASLAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVENRGRTTYNEVADELVAEFSDPSTSELTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKTERLGLRNRIEKKTAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQEENTTHNFTDGGEGSSMSGLCQPQAPPTNLKVSNRPPTSPPLPGILKARRNWLQLVDRHNSYSSVQPNHSVG 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00243 339 MobiDBLite consensus disorder prediction 269 309 - -
Phco9g00243 339 PANTHER TRANSCRIPTION FACTOR DP 18 274 IPR015648 GO:0005667|GO:0051726
Phco9g00243 339 SMART E2F_TDP_2 69 152 IPR003316 GO:0005667|GO:0006355
Phco9g00243 339 Pfam E2F/DP family winged-helix DNA-binding domain 72 152 IPR003316 GO:0005667|GO:0006355
Phco9g00243 339 SUPERFAMILY "Winged helix" DNA-binding domain 72 153 IPR036390 -
Phco9g00243 339 SMART DP_2 159 319 IPR014889 -
Phco9g00243 339 CDD DP_DD 157 260 IPR014889 -
Phco9g00243 339 MobiDBLite consensus disorder prediction 13 31 - -
Phco9g00243 339 Gene3D Transcription factor DP 158 278 IPR038168 -
Phco9g00243 339 MobiDBLite consensus disorder prediction 1 33 - -
Phco9g00243 339 FunFam Transcription factor-like protein DPB 158 282 - -
Phco9g00243 339 Pfam Transcription factor DP 160 273 IPR014889 -
Phco9g00243 339 FunFam Transcription factor-like protein DPB 64 157 - -
Phco9g00243 339 SUPERFAMILY E2F-DP heterodimerization region 159 272 IPR037241 -
Phco9g00243 339 MobiDBLite consensus disorder prediction 49 73 - -
Phco9g00243 339 PIRSF Txn_factor_DP 8 319 IPR015648 GO:0005667|GO:0051726
Phco9g00243 339 Gene3D - 65 157 IPR036388 -
Phco9g00243 339 Coils Coil 168 202 - -
Phco9g00243 339 MobiDBLite consensus disorder prediction 272 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00243 Phco-Chr9 1580051 1582813 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phco9g00243 DP 1.8e-42 No_clan