Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00231 ATGGGGAGAGCACCATCCAGTGATGAAAGTGGTTTGAAGAAGGGGCCTTGGACCCCAGAAGAGGATAATATATTGGTGGAATACATTCAGAAACATGGGCATGGAAGTTGGAGAGCACTTCCAAAACTTGCAGGATTGAACAGGTGTGGGAAAAGTTGTAGGCTAAGGTGGACAAACTATTTGAGGCCTGACATCAAAAGAGGAAAGTTCTCTCAGGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCAGCTATAGCAGGTCATCTTCCAGGTAGGACTGATAATGAAATCAAGAACTTCTGGAACACTCATTTAAAGAAAAAGCTTCTACAAATGGGGTTAGATCCAGTGACTCATCGTCCAAGATCAGACCACCTTAATCTTCTATCCAGTCTTCAACAGTTGCTGGCTGCTACAAACATTGTCAGTAATTTCACAAACAGTTGGGACATTAATGTTGCAAGGCTGCAATCAGATGCCGCAGAACTAGCCAAACTCCAATTGCTGCATAACTTACTTCAAGTCCTTGTGGCCAATCCTTCCTCAAACTTGGACTTGCTCAATCCTTTTGGACCATCACTGCCAGATGGTTTGCTAAATGAAGTTCTGGGATTGGATCAGTCTAAGCTCCAAAACCTTTACAATAGTTCAACTGGTTTTGTTTCTCAGAATCAGCCAAGCTTCCAAAGCTTTGAAGCCCCTTCTCAGCAGCAAGGTCTACCTAACCACATGAATGGAGGAAGCAACAGGAGTTGCATGAAATCTGAAAAGGTTGATGAACAACTTGGTGCCCCATATTCTTTTTCAACGCCATTAGAATCTCTTCCAAATCTAGTTTCAGCATCACCCGAATGTTCAACTGGCAAGGAAATGGAAAACAAGGTAAACCCAAATGAGTTTTGTGAGCCTTCTTCCACTTCAACCACCTTTGAAATATGGGGAGATTTCATGTATGAAGAAGTAAGCGATGCTTATTGGAAAGATCTCATAGACCAAGAAGAGTGTAACCAGTAG 1035 0.4232 MGRAPSSDESGLKKGPWTPEEDNILVEYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSSLQQLLAATNIVSNFTNSWDINVARLQSDAAELAKLQLLHNLLQVLVANPSSNLDLLNPFGPSLPDGLLNEVLGLDQSKLQNLYNSSTGFVSQNQPSFQSFEAPSQQQGLPNHMNGGSNRSCMKSEKVDEQLGAPYSFSTPLESLPNLVSASPECSTGKEMENKVNPNEFCEPSSTSTTFEIWGDFMYEEVSDAYWKDLIDQEECNQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00231 344 CDD SANT 69 112 IPR001005 -
Phco9g00231 344 CDD SANT 16 61 IPR001005 -
Phco9g00231 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco9g00231 344 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco9g00231 344 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco9g00231 344 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco9g00231 344 Gene3D - 11 67 - -
Phco9g00231 344 SMART sant 66 114 IPR001005 -
Phco9g00231 344 SMART sant 13 63 IPR001005 -
Phco9g00231 344 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 283 - -
Phco9g00231 344 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco9g00231 344 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco9g00231 344 FunFam MYB-related transcription factor 13 66 - -
Phco9g00231 344 FunFam Transcription factor MYB39 69 130 - -
Phco9g00231 344 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco9g00231 344 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00231 Phco-Chr9 1519344 1520667 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g00231 Myb_DNA-binding 4.7e-17 CL0123