Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00223 ATGATGGAGATGTTCTTCTGTAGCAGCAACCACCTTCTTCAACCTTCTCAAAACCCTTCTAATCTGCTCCTTCTTTCTGGTCCTCCTTCTTCTGGGAAAACTTCTCTGCTTTTTCAATTTGCATTCAATGTAGCACTTCACTCCCATAACGTCATCTTCATTTCCAACCGCCAAAGATTGGATTCCAAACCCCCTTTTCTCTCTCAGGGCATTGATCCATCTTCTCATGTCTTCCACCGTATACAAATGAAATACGTGAATGATGATGAAGACATCAGAAAGTACTTTGCTGCGTTCCACCTGTATGATACATTGCCTGCAGCAGTTCTTATTGATGATTTTGGTGATTTCTTTGACAACAAGATCTGCCAACAACGGTATTGCAATCCCCGCGGACGAGACATGGCCATGGTCAAGACTCTAGCCTTATGCCACAATGCAATTACTTTTGCAAACCAAAAAGGGTCTTGCAAGGTTCTGTTGTCAGATACTCATACTCACCAGAGAGACTCCCCAAGGTTTCAATTCATATATAAGAAATGGATACAAACCACTTTTACTATTCAAGAAGGGAATGTATCTGGATCGTTTATTCTGAAAGATAGGAGTCATTCAGCAACTGATCGCAACACAGCTATGACCAAAGCTGCAAAGTACTCAATAGCTCTTCAATATCTGGTTTTTGAAGGAATTGTTGAAGATCAATTATACACAATGAACCGAACTTCGGAGCCGGCATCTTCATCAACAGTGTCAAATCTTGGGTTCTGTGGTGAAGAACAGAAAAGCCTGGCCAGATTACTATACACTTCTGAAAAGACAAGTAGTCTGAGAGGTTTCAATGAAGAACATGGTGTTGTGGGGGGAAAGGAAGAAGAAAACATGTGGCCTTCATGGCTGCGGCCACTTCTCAAGACGAGTTTTTTTGTTCAATGCAAAGTCCACGCAGATTCCCACAAGAATGAATGCAATATGTATTGCTTGGACTGTGTGAATGGAGCCCTTTGCTCTGCATGTCTTGCTTCCCACAAAGAACACAGAACAATCCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTATCTGAGATACAAAAATTTCTGGACATAACAGGCGTCCAAACTTACATTATTAACAGTGCCAAGATTGTGTTCTTGAATGAAAGGCCCCAACCAAGGCCTGGAAAAGGGGTCACCAATACCTGCCAAGTTTGTGACCGCAGCCTCCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAAAAGTTCCGGAAGAAGAAAATGTTAGGTGAGACAGATGGGTCTGATGGTGAAGAATCAGTGAACGGCTTAAGCAATATAAATGCTAGAAACAAAATCCATAGCTTTACACCTTCAACACCACCACCAACAGTGGCTAATTACAGAACTGCCAAGAGAAGGAAAGGAATTCCACATAGAGCTCCAATGGGTGGAGGGCTTATTATAGAATACAATGTTGTATAG 1506 0.421 MMEMFFCSSNHLLQPSQNPSNLLLLSGPPSSGKTSLLFQFAFNVALHSHNVIFISNRQRLDSKPPFLSQGIDPSSHVFHRIQMKYVNDDEDIRKYFAAFHLYDTLPAAVLIDDFGDFFDNKICQQRYCNPRGRDMAMVKTLALCHNAITFANQKGSCKVLLSDTHTHQRDSPRFQFIYKKWIQTTFTIQEGNVSGSFILKDRSHSATDRNTAMTKAAKYSIALQYLVFEGIVEDQLYTMNRTSEPASSSTVSNLGFCGEEQKSLARLLYTSEKTSSLRGFNEEHGVVGGKEEENMWPSWLRPLLKTSFFVQCKVHADSHKNECNMYCLDCVNGALCSACLASHKEHRTIQIRRSSYHDVIRVSEIQKFLDITGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCDRSLLDSFSFCSLGCKIVGTSKKFRKKKMLGETDGSDGEESVNGLSNINARNKIHSFTPSTPPPTVANYRTAKRRKGIPHRAPMGGGLIIEYNVV 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00223 501 Gene3D - 10 218 IPR027417 -
Phco9g00223 501 PANTHER - 2 234 - -
Phco9g00223 501 Pfam PLATZ transcription factor 352 423 IPR006734 -
Phco9g00223 501 CDD Bbox2 312 351 - -
Phco9g00223 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 17 175 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00223 Phco-Chr9 1464392 1471255 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Phco9g00223 PLATZ 1.4e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00223 9 1464392 1471255 Phco4g00147 4 864575 868841 ECH
Phco9g00223 9 1464392 1471255 Phco9g00223 9 1464392 1471255 ECH