Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00215 ATGAACAGCAGTGGTGGAGGAACTTTGATGGGTTTGAGCAATGGTTATTATGGGAGATCGCCATTCACAGTGTCTCAGTGGGAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGCTTGCGGGTCTTCCTGTGCCTCATAATCTTGTGCTCCCCATTCAGAAGAGCTTCTTTCACCACCCCACATTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGATCCAGAGCCAGGGCGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGAATCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTGTGACTCAATCTTCTTCAACTGTCACATCACTTGATGTCACTGGTGGTAGTGGCAGAAGTAGAACTCTAAACTTCCAAAACCTTCCTGCAAATGGCTTTGGTAATCTCCAGGGTACTGATTCTGGAACTCACCATACCAATTATCATCTAGATTCCATTCCTTATGCGATCCCTAGTAAAGAATGCAGGTATCTTCAAGGACTTAAATCTGAGGGTGGTGAACATATCTTCTTTTCTGAAGCTTCAGGAAGCAACAAGGTGCTCCAAATGGAGTCACAGCTGGAGCACACATGGCCTTTGATGTCTACCAGAGTTGCCTCTTTCACTGCATCAAAATCAAGTAAAGATTCCCTGTTGCACAGTGATTATCCCCAACATTCGTTTTTATCTGGTGAATATGCATCAGAAGAGCAGCTGAAGGAGGAGGATCAATCTCTTCGACCCTTTTTCAATGAATGGCCAAAAAGCAGGGATTCATGGTCTGCACTGGAAGATGAGAGATCTAACCAAACAGCCTTCTCCACAACTCAACTCTCAATATCCATTCCCATGTCTTCCGATATCTCTGCAACGAGCTCTCAGTCCCCACATGGCGAGAATGAGATTCAATTTCGGTAA 981 0.4587 MNSSGGGTLMGLSNGYYGRSPFTVSQWEELEHQALIFKYMLAGLPVPHNLVLPIQKSFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPESKYCERHMHRGRNRSRKPVESQTVTQSSSTVTSLDVTGGSGRSRTLNFQNLPANGFGNLQGTDSGTHHTNYHLDSIPYAIPSKECRYLQGLKSEGGEHIFFSEASGSNKVLQMESQLEHTWPLMSTRVASFTASKSSKDSLLHSDYPQHSFLSGEYASEEQLKEEDQSLRPFFNEWPKSRDSWSALEDERSNQTAFSTTQLSISIPMSSDISATSSQSPHGENEIQFR 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00215 326 SMART QLQ_2 20 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco9g00215 326 PANTHER GROWTH-REGULATING FACTOR 5 15 308 IPR031137 GO:0005634|GO:0006351|GO:0032502
Phco9g00215 326 MobiDBLite consensus disorder prediction 116 147 - -
Phco9g00215 326 MobiDBLite consensus disorder prediction 305 326 - -
Phco9g00215 326 ProSiteProfiles WRC domain profile. 75 119 IPR014977 -
Phco9g00215 326 ProSiteProfiles QLQ domain profile. 21 56 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco9g00215 326 Pfam QLQ 21 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Phco9g00215 326 MobiDBLite consensus disorder prediction 106 147 - -
Phco9g00215 326 Pfam WRC 76 118 IPR014977 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00215 Phco-Chr9 1399374 1402312 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Phco9g00215 WRC 6.9e-21 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00215 9 1399374 1402312 Phco9g00215 9 1399374 1402312 ECH