Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00212 ATGTTTGAGATGGGAGTTGCTGGATTTGAAATTAATAGGAATTATGCTTCTGCTTCTATTTTGCATTTTGGTGCCAATTCGTTATCTTCCTATACGGTGCCTATTTCTTTGAGACCCTTTTTTGGGAATGCTTTGAACGCGAGGTTTACGGGGAAGATTCGGGTTTCTCATACTCGGAAGCCGAATTTTGGTGCAGTTACTGCTTCACTGAATGATGGCTCTAATGTTGGGTTGATTATTGATGCGGTTCTTCCGAAAGACTCAGAGTTTAAACCTTCCTTTGACGAATATTTGAAGGCTATGGAATCTGCCAGAACTGTGAGGGACAAGAAGCGTGCTGCCACTACTAGAAAACAGAAGATGCCGGAAAAGGGTGACAGCACCAAAAAATTTAGCAGTGCAAGAGTGAAAATTGAGAGAAAAGATGGGCTTGAAGATGCTAAAGACGGTTCCTCCAGAAGTAGCGGCAAATTCAGAAGATCACCTACTAAAGGATTTAGAAGTGAAAACGACCTTGATGTAAAGGCAAAGCAGAAAAATGGGTTGTTGAAACGCCAGAGTCATAGTTTAGAACCAGAATCTAAGAGTATAGTAAGGTCTAGTTTGAATGGTAGCCGTGGGAGTGTCATAAAGAGGGGGGTTATTCATGATTTATATTCTTCAAAGATTATGGGAGAGAAGAATTTTGGTAGCAGACAAAGGGATTACAAAACACAGGGTAAAATCCCTGATAGAGATAAAATTGCAGTAACACAAAATGTTCAGGACAGAGGAATTGTAAGAAGACACAGTGAGAATGGAAGTTTTATAAATAGAAATGGTGTGTCTAATGTCAAAATGAATGGAAGCCGCAAGCGTTTCATTGACAGGGGTTATGATTCTGACAGTCCTGAGGTGGACCGAGCAGCATTTGAGAATCTGGAGGACCCGAACAAGATTATCAGAAAGACACAATTTTCACACAAGGAAATGGAGGAGAAAATCCAAAAGCTAGCCAATACGTTAAACGGTGCAGATATCAATTTACCTGAATGGATATTTTCTAAGATGATCAGAAGTGCAAGGCTTAAATTTTCTGACTATTCCATAACAAGGATTATCACAATCTTGGGAAAACTAGGAAACTGGCGGCGAGTGATACAGGTGATTGAGTGGCTTCAAAAGCGTGAACGTTTTGAGTCCCATAAGCTAAGGAATATATATACTGCTGCTCTTGATGCACTTGGAAAGTCCAGGAGACCTGTAGAAGCACTAAATATATTTCATGCAATGCAGCAACAAATGTCCTCGTATCCTCATTTAGTAGCTTATCGGAGTATTGCTGTGACTCTTGGACAAGCAGGGCTCATGAAGGAACTCTTTGATGTGATTGATACTATGCGATCACCACCTAAGAAAAAGTTCAAAACAGGGGTATTTGAGAGCTGGGACCCAAGGCTGGAACCAGATTTTGTAGTCTATCATGCAGTCCTTAATGCTTGTGTTAGGCAGAAACAATGGGAAGGAGCCTTTTGGGTTTTGCAGCAGTTAAAGAAGCAAGGACAACAACCTTCTGCCACAACTTACGGCCTAGTAATGGAGGTGATGTTTTCATGTGGCAAGTACAACTTGGTTCATGAATTTTTCAGAAAACTTCAGAAGTCTTTCATTCCCAATTCATTGACATATAGAGTTCTTGTAAATACACTGTGGAAAGAGGGAAAAACTGATGAGGCTATATTGGCTGTCCAAGAAATGGAAAATCGTGGTATTGTAGGTTCGGCTTCTCTTTATTATGATCTAGCTCGATGCCTTTGTGCAGCTGGAAGAAGTCACGAGGCACTAAAGCAGATAGACAAGATATGTAAGGTTGCAAATAAACCACTGGTAGTGACCTACACTGGCTTGATGCAAGCAAGTCTAGACTCTGGAAATATTCAAGATGGGGCTTATATTTTTGAGAAAATGAAGGAAGTTTGTGCTCCAAATCTGGTTACTTATAACATTTTGCTGAAAGTTTACTTGGAACATGGCATGTTTCAAGAAGCTAAAGCGCTGTTTGAGCAGATGTCAGAAAATGCAAATTCTCTTAGGGGAAATACTGATTACAAGATGCTGGTGGTACCAGATACATACACATTCAACACCATGTTAGATGCATGTGTTTCAGAGCAGAGATGGGATTATTTTGACCATGTCTATCAAAAGATGTTGTACCATGGTTACCATTTCAATCAAAAACGTCATCTTCAAATGATATTGGAGGCTTCTAGAGCAGGAAAGGAACGGCCTTTGGAGATAACATGGAAACACTTATCCGACATGGATCGAACTCCACCAACTTCTCTGATCAAGGAGAGGTTTTGTTCTAAGCTTGAAAAAGAAGACTATGTTGCTGCCCTCACGTGTATGACCAAAAATCTCCCAACAGACTCACAGCCATTTTCCAAATCATCTTGGTTGAAACTATTGAAAATGAATTCTCACCGGTTTCGGAAGGATACCATTGTTGGATTGATGAACGAAGCCAGCAAAATAGTTTCCAATAGTAGTTTACCAAATGCAACACTTGAGTATTTAATACGATCATGTAAAAAAATTCTTTTTGCCACTGACATCAGTGAAGCTGACATGGATTCAGTGAAAAATGTTCTTGAAGTGGAAGTAGAGAATAAGCTGGCAATAGCCAACTCTAGATGA 2679 0.4001 MFEMGVAGFEINRNYASASILHFGANSLSSYTVPISLRPFFGNALNARFTGKIRVSHTRKPNFGAVTASLNDGSNVGLIIDAVLPKDSEFKPSFDEYLKAMESARTVRDKKRAATTRKQKMPEKGDSTKKFSSARVKIERKDGLEDAKDGSSRSSGKFRRSPTKGFRSENDLDVKAKQKNGLLKRQSHSLEPESKSIVRSSLNGSRGSVIKRGVIHDLYSSKIMGEKNFGSRQRDYKTQGKIPDRDKIAVTQNVQDRGIVRRHSENGSFINRNGVSNVKMNGSRKRFIDRGYDSDSPEVDRAAFENLEDPNKIIRKTQFSHKEMEEKIQKLANTLNGADINLPEWIFSKMIRSARLKFSDYSITRIITILGKLGNWRRVIQVIEWLQKRERFESHKLRNIYTAALDALGKSRRPVEALNIFHAMQQQMSSYPHLVAYRSIAVTLGQAGLMKELFDVIDTMRSPPKKKFKTGVFESWDPRLEPDFVVYHAVLNACVRQKQWEGAFWVLQQLKKQGQQPSATTYGLVMEVMFSCGKYNLVHEFFRKLQKSFIPNSLTYRVLVNTLWKEGKTDEAILAVQEMENRGIVGSASLYYDLARCLCAAGRSHEALKQIDKICKVANKPLVVTYTGLMQASLDSGNIQDGAYIFEKMKEVCAPNLVTYNILLKVYLEHGMFQEAKALFEQMSENANSLRGNTDYKMLVVPDTYTFNTMLDACVSEQRWDYFDHVYQKMLYHGYHFNQKRHLQMILEASRAGKERPLEITWKHLSDMDRTPPTSLIKERFCSKLEKEDYVAALTCMTKNLPTDSQPFSKSSWLKLLKMNSHRFRKDTIVGLMNEASKIVSNSSLPNATLEYLIRSCKKILFATDISEADMDSVKNVLEVEVENKLAIANSR 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00212 892 Pfam Pentatricopeptide repeat domain 622 667 IPR002885 -
Phco9g00212 892 Pfam Pentatricopeptide repeat domain 480 528 IPR002885 -
Phco9g00212 892 PANTHER OS01G0674700 PROTEIN 69 870 IPR044645 GO:0009658
Phco9g00212 892 MobiDBLite consensus disorder prediction 105 155 - -
Phco9g00212 892 Gene3D Tetratricopeptide repeat domain 471 571 IPR011990 GO:0005515
Phco9g00212 892 Gene3D Tetratricopeptide repeat domain 322 470 IPR011990 GO:0005515
Phco9g00212 892 Gene3D Tetratricopeptide repeat domain 606 784 IPR011990 GO:0005515
Phco9g00212 892 MobiDBLite consensus disorder prediction 162 192 - -
Phco9g00212 892 FunFam Pentatricopeptide repeat-containing protein 326 472 - -
Phco9g00212 892 NCBIfam pentatricopeptide repeat 658 686 IPR002885 -
Phco9g00212 892 NCBIfam pentatricopeptide repeat 485 518 IPR002885 -
Phco9g00212 892 NCBIfam pentatricopeptide repeat 705 731 IPR002885 -
Phco9g00212 892 MobiDBLite consensus disorder prediction 105 199 - -
Phco9g00212 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 586 IPR002885 -
Phco9g00212 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Phco9g00212 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 703 737 IPR002885 -
Phco9g00212 892 Coils Coil 321 341 - -
Phco9g00212 892 Pfam PPR repeat 705 734 IPR002885 -
Phco9g00212 892 Pfam PPR repeat 401 426 IPR002885 -
Phco9g00212 892 Pfam PPR repeat 555 584 IPR002885 -
Phco9g00212 892 SUPERFAMILY TPR-like 470 685 IPR011990 GO:0005515
Phco9g00212 892 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00212 Phco-Chr9 1377717 1386456 Dispersed