Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00202 | ATGGCTGTTGAGACTTCCGGTAAACCGAATCTACCTCATGATTTTGATGATGATGATGATGATGCACCCATAATTTACAAAAGGAAGTCAAACCAATCACTTTCAGTAGCTAAGAAAAATCAATCACTTTCAGAAGCAAGGAAGTCAAGTTCTCACATTCATGAGGGACAGTCATATAGACAGATTCCTAACGCATCTTCTTCGAATGGCCAAACTTCTAGCATGCAGAAAGGTAATACTGCCCCATCTCTTAAGCCATCAGCCACGAAGCCTTCTGTAGGTATCTCAAGAGCTCCAAATTCTGTTGGCAACACCTCCTCTGTGAAGTTTCCTGTAGCAAATTCAAAATCACCTTCATTGGCAGATAAGCAGAAAATGTCCATTGATGTCAAGGTGGAACCAAAATCTACTGTACTCAGTGGTAAAGATTTCTGTGAAGATTCTGAAGATGATGAGGATAATAAACCGTTGAGTTTTAGGTTGAAGAATTCTAACCATGATAACAAGGTGACGTCTGTTGTCAAGAAATCTTATGAAGACTCTGATGGTGATGATGATGTCCCTTTGGCAAACAAGTTACCTCGTAATTTCAATTTGGGAACAAGTAGCAGTAACCATGACGACTCTGATAAGAAGCCTATTTCTAAAATTCAGAGAGAGCGGCAAAATGGTTCTGGCATGAGTAATAAACAGGATAGGCCATCTCTATTGCCAGCTAAAAGACCACTAGATAATAGCAATTCCTTGCACCCTTCTGTTAAGAAGCCTAAGGTCTCAGGCTCAGATGCATCTATCAAAACCAAGCCAGGCTTTCAGAAACGTGAGCTGAAGCTAGAGGATGATGATGATGATGATGATATTCCTATTTCCCAGAGAATAAAGAAACAAACCGTGTCTGGTGATAAATCATCTTCCATGAAGAAGGTGTCTACAAAGGTTGCTAAAGTTAACAAGTCTAGTTCAAAATCTTTCAAGAAACAGACCAAGAAGACACTTAAAAAATCAGGTAGTGGTTCAGAATATTCCAAATCTAGCAAACTTCTTCCTAGCTCTGGTGATGGGCAGAAAAAATGGACTACTTTGGTTCACAATGGTGTCATTTTCCCCCCTCCTTACCAGCGGCATGGTGTAAAGATGCTCTATAAGGGAAGACCAGTTGATTTGACTCCTGAGCAAGAGGAGGTTGCTACTATGTATGCAGTCATGCGAGATACTGAGTACATGCAGAAAGATAAGTTCAAGGATAATTTCTGGTTTGACTGGCGAAAGTTGCTTGGAAGAAATCATGTTATCCAGAACTTGAAAGACTGTGATTTCACTCCAATATATGACTGGTACCAAAGTGAGAAGGAAAAGAAGAAGCAAATGACCACCGAAGAGAAGAAAACTTTGAAGGAAGAGAAAATGAAACAAGAGGAGAAATACATGTGGGCTATTGTAGATGGTGTTAAAGAGAAGGTTGGGAATTTTAGAGTTGAACCACCAGGATTGTTCCGAGGCCGGGGAGAGCACCCCAAGATGGGAAAATTGAAAAGACGCATTCATCCAGGTGATATCACAATTAATATTGGAAAGGATGCCCCAATTCCTGAATGTCCTATTCCTGGTGAAAGGTGGAAGGAGATAAGACATGATAATACAGTTACTTGGTTAGCCTATTGGAGTGACCCTATAAATCCAAAGTTATTCAAATATGTGTTTCTGGCTGCTAGTAGTTCCTTGAAGGGTCAAAGTGACAAGGAAAAGTATGAGAAAGCTAGGATGTTAAAGGATTATATAGAGAACATTAGGTCTGCATACACAAAAGATTTTACCAATAAAGATATTACTAAGCTGCAAATTGCTGTTGCTACTTATCTTATTGATAAACTAGCTCTGAGGGCTGGCAATGAGAAGGATGATGATGAAGCTGATACTGTTGGCTGCTGCACATTAAAAGTAGAGAATGTGATAAGAGAACCTCCCAACAAACTCAAGTTTAACTTCCTTGGTAAAGATTCTATCAAGTATGAAAATACAGTTGAGGTTGAGCTTCCTGTATATAATGCAATCTTGAAGTTACAAAAAGATAAACGTCCTGGTGATGATCTTTTTGATAAGCTGGATACAAGTAAATTAAATGCTCATCTAAAGGAACTCATGCCTGGTCTAACAGCAAAAGTCTTCCGTACATTCAATGCATCAATCACATTGGATAATATGTTAAATAAAGAAACTAAAGACGGAGATGTTGGGGAGAAAATTGTTGTTTATCAGCATGCAAATAAACAGGTTGCTATCATTTGCAATCATCAACGTAGTGTTTCAAAATCTCATGATGCACAAATGTCAAAGTTAACTGAAAAAATTGATGAACTTCAGGCTGTTCTGAAGGAGCTGAAAACGGATTTAGACAGGGCAAGGAAAGGAAAGCCTCCTACAAAGAGTTCAGATGGAAAGACAAAAAAGAACTTGACTCCTGAAGTACTAGAGAAAAAGATATCTCAAACCAATGCTAAAATCGAGAAGATGCAACGGGATATGAAGACAAAAGAAGATTTAAAAACTGTGGCATTAGGCACATCCAAGATAAACTACCTTGACCCTAGGATTACAGTTGCCTGGTGCAAGCGGCATGAGGTTCCTATTGAAAAGATTTTCAACAAATCTCTGCTGGCAAAATTCTGTTGGGCAATGGATGTGGATCCGGACTTCAGATTCTGA | 2703 | 0.3903 | MAVETSGKPNLPHDFDDDDDDAPIIYKRKSNQSLSVAKKNQSLSEARKSSSHIHEGQSYRQIPNASSSNGQTSSMQKGNTAPSLKPSATKPSVGISRAPNSVGNTSSVKFPVANSKSPSLADKQKMSIDVKVEPKSTVLSGKDFCEDSEDDEDNKPLSFRLKNSNHDNKVTSVVKKSYEDSDGDDDVPLANKLPRNFNLGTSSSNHDDSDKKPISKIQRERQNGSGMSNKQDRPSLLPAKRPLDNSNSLHPSVKKPKVSGSDASIKTKPGFQKRELKLEDDDDDDDIPISQRIKKQTVSGDKSSSMKKVSTKVAKVNKSSSKSFKKQTKKTLKKSGSGSEYSKSSKLLPSSGDGQKKWTTLVHNGVIFPPPYQRHGVKMLYKGRPVDLTPEQEEVATMYAVMRDTEYMQKDKFKDNFWFDWRKLLGRNHVIQNLKDCDFTPIYDWYQSEKEKKKQMTTEEKKTLKEEKMKQEEKYMWAIVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKRRIHPGDITINIGKDAPIPECPIPGERWKEIRHDNTVTWLAYWSDPINPKLFKYVFLAASSSLKGQSDKEKYEKARMLKDYIENIRSAYTKDFTNKDITKLQIAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVIREPPNKLKFNFLGKDSIKYENTVEVELPVYNAILKLQKDKRPGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTFNASITLDNMLNKETKDGDVGEKIVVYQHANKQVAIICNHQRSVSKSHDAQMSKLTEKIDELQAVLKELKTDLDRARKGKPPTKSSDGKTKKNLTPEVLEKKISQTNAKIEKMQRDMKTKEDLKTVALGTSKINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFCWAMDVDPDFRF | 900 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00202 | 900 | Gene3D | Topoisomerase I; Chain A, domain 3 | 571 | 719 | IPR014711 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | Pfam | Eukaryotic DNA topoisomerase I, DNA binding fragment | 357 | 568 | IPR008336 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 55 | 122 | - | - | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 1 | 354 | - | - | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
| Phco9g00202 | 900 | SUPERFAMILY | Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment | 352 | 569 | IPR036202 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Phco9g00202 | 900 | Coils | Coil | 827 | 847 | - | - | |
| Phco9g00202 | 900 | CDD | Topoisomer_IB_N | 357 | 569 | - | - | |
| Phco9g00202 | 900 | SMART | topeu | 497 | 873 | IPR013499 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Phco9g00202 | 900 | Gene3D | - | 373 | 456 | IPR013034 | GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | FunFam | DNA topoisomerase I | 720 | 900 | - | - | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 172 | 189 | - | - | |
| Phco9g00202 | 900 | CDD | Topo_IB_C | 577 | 770 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | Coils | Coil | 769 | 803 | - | - | |
| Phco9g00202 | 900 | Coils | Coil | 447 | 474 | - | - | |
| Phco9g00202 | 900 | Gene3D | DNA Topoisomerase I, domain 2 | 353 | 568 | IPR013030 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Phco9g00202 | 900 | PANTHER | DNA TOPOISOMERASE I | 136 | 900 | - | - | |
| Phco9g00202 | 900 | FunFam | DNA topoisomerase I | 571 | 719 | - | - | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 796 | 819 | - | - | |
| Phco9g00202 | 900 | SUPERFAMILY | DNA breaking-rejoining enzymes | 571 | 897 | IPR011010 | GO:0003677 | |
| Phco9g00202 | 900 | FunFam | DNA topoisomerase I | 446 | 568 | - | - | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 334 | 354 | - | - | |
| Phco9g00202 | 900 | FunFam | DNA topoisomerase I | 372 | 456 | - | - | |
| Phco9g00202 | 900 | Gene3D | - | 720 | 900 | IPR014727 | GO:0003677|GO:0003917|GO:0005694|GO:0006265 | |
| Phco9g00202 | 900 | ProSitePatterns | Eukaryotic DNA topoisomerase I active site. | 846 | 864 | IPR018521 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | Pfam | C-terminal topoisomerase domain | 832 | 900 | IPR025834 | - | |
| Phco9g00202 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 636 | 650 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 658 | 674 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 613 | 632 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 497 | 506 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 853 | 864 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | PRINTS | Eukaryotic DNA topoisomerase I signature | 716 | 730 | IPR001631 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | Pfam | Eukaryotic DNA topoisomerase I, catalytic core | 571 | 796 | IPR013500 | GO:0003677|GO:0003917|GO:0006265 | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 292 | 321 | - | - | |
| Phco9g00202 | 900 | MobiDBLite | consensus disorder prediction | 28 | 47 | - | - |