Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00192 ATGGAAGCCCTAAAACTATGCACTCTAATATGGAACCCAATGAATCACGCATTTCGTCGAACACCTCAAACGCTTGTTTTCCGCGCCTGCTCAACTTCCACCACCGCCGATACCAGGGCTGCCGGTCGCAATCGCCGGAGCTCGACGTCGTCGTCGTCCACCACTTCGACTTCCGATAGGGATGCCATTCGAGCCATTCGTTTGAAGAAGGTTGAAGAATTGAGAAGCAAGGGGCTTGATCCGTATGCTTATGAATGGGACAAAACTCACTGTGCTAGTCAGCTGCAAGATATCTACATAGATTTGGCAAATGGTGAGGAAAAAAATAGCGAGAGTGACCACGTATCTGTTGCGGGAAGAATTGTGGCCTGGAGGGCATTCCGAAAGCTTGCATTTCTCATACTAAGAGATGATTCTGGGTCAATTCAGCTCTATTGTGATAAGGAGAGACTCGTAGGCGATCAGTTTGAACAGTTAAAGGCGTATGTTGATATTGGTGATATATTAGGTGTAAGAGGAACAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTGTGTCCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGACTAACCGATAAAGATAAATGTTATCGACAGAGGTATGTAGATATGATCGCAAATCCAGAGGTAACAGATGTATTACGTAAAAGAGAAAAGGTAAAATCAGAGATACGGAAGACTATGGATTCTTTAGGTTTTGTTGAAGTTGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACATTTTATTACATACCATAATTCTCTTGGAAGAGACTTATATCTGAGAATTGCAACTGAATTACATCTGAAGAGAATGCTGGTGGGTGGTTTTGAAAAAGTGTACGAGATGGGTCCAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACAACTATAGAGATGTACGAAGCATACTCGGATTATCAAAGCATGATGAGTTTGGCAGAGGAGATTGTCACTCGATGTGCTCTTGCAGTTCATGGGAAGCTTACAGTTGATTATCAGGGAGTCGAGATATGTCTAGAAAAGCCTTGGAGGAGGGAGACTATGCACAATCTTGTTAAAGAAATTGCTGGGGTCGATTTCAGTGAATTTGGATATGATCTTGAGGTTGCAAAGCGTATTACTCAGGATACCCTTGGAAAGAATCTTGATAAAAAAGATAAAGGTTCCATTGAAGCATGCCGATCCGTTGGCCACCTTCTTAATGAGGTTTTTGAGATTTTTGTAGAACCAAAGCTCATCCAACCTACTTTTGTTCTAGACTATCCAATTGAGATATCTCCACTTGCAAAACCACACAGAAGATCCACAGGTTTGACCGAGAGATTTGAACTTTTCATTTGTGGTCATGAGTTGGGTAATGCATTCTCCGAATTGACTGATCCTATAGATCAGAGGGAACGCTTGGAAGATCAAATTAGACAGCATGAAAAGAAGAGGTCAGCTGTTTCAGCAAATGATGATAAAAAGGAAGGAAATGAAGATGAAGATGACTCATATGAAGTAACTCTTGATAATGACTTTCTCACAGCTTTGGAATACGGAATGCCTCCAGCTTCGGGAATGGGACTTGGAATTGATAGGCTCGTGATGCTTTTGACAAATTCTCCCAGTATTCGAGATGTTATCGCCTTCCCAGTACTCAAGCTGCAGCAATAG 1740 0.4184 MEALKLCTLIWNPMNHAFRRTPQTLVFRACSTSTTADTRAAGRNRRSSTSSSSTTSTSDRDAIRAIRLKKVEELRSKGLDPYAYEWDKTHCASQLQDIYIDLANGEEKNSESDHVSVAGRIVAWRAFRKLAFLILRDDSGSIQLYCDKERLVGDQFEQLKAYVDIGDILGVRGTIKRTEKGELSVCVLSFAILTKSLLPLPDKYHGLTDKDKCYRQRYVDMIANPEVTDVLRKREKVKSEIRKTMDSLGFVEVETPVLQGAAGGAEARHFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEMGPIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMSLAEEIVTRCALAVHGKLTVDYQGVEICLEKPWRRETMHNLVKEIAGVDFSEFGYDLEVAKRITQDTLGKNLDKKDKGSIEACRSVGHLLNEVFEIFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGHELGNAFSELTDPIDQRERLEDQIRQHEKKRSAVSANDDKKEGNEDEDDSYEVTLDNDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKLQQ 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00192 579 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 234 573 IPR006195 -
Phco9g00192 579 NCBIfam lysine--tRNA ligase 65 577 IPR002313 GO:0004824|GO:0005524|GO:0006430
Phco9g00192 579 PANTHER LYSYL-TRNA SYNTHETASE 43 578 - -
Phco9g00192 579 Pfam tRNA synthetases class II (D, K and N) 211 575 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Phco9g00192 579 SUPERFAMILY Nucleic acid-binding proteins 60 202 IPR012340 -
Phco9g00192 579 CDD LysRS_core 224 576 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phco9g00192 579 FunFam Lysine--tRNA ligase 60 202 - -
Phco9g00192 579 Gene3D - 61 201 IPR012340 -
Phco9g00192 579 SUPERFAMILY Class II aaRS and biotin synthetases 209 575 IPR045864 -
Phco9g00192 579 FunFam Lysine--tRNA ligase 205 579 - -
Phco9g00192 579 MobiDBLite consensus disorder prediction 498 517 - -
Phco9g00192 579 Coils Coil 493 513 - -
Phco9g00192 579 CDD LysRS_N 114 221 IPR044136 GO:0000166
Phco9g00192 579 Pfam OB-fold nucleic acid binding domain 115 189 IPR004365 GO:0003676
Phco9g00192 579 Hamap Lysine--tRNA ligase [lysS]. 66 578 IPR002313 GO:0004824|GO:0005524|GO:0006430
Phco9g00192 579 Gene3D Bira Bifunctional Protein; Domain 2 205 579 IPR045864 -
Phco9g00192 579 PRINTS Lysyl-tRNA synthetase signature 442 458 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phco9g00192 579 PRINTS Lysyl-tRNA synthetase signature 262 278 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phco9g00192 579 PRINTS Lysyl-tRNA synthetase signature 309 326 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phco9g00192 579 PRINTS Lysyl-tRNA synthetase signature 246 256 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phco9g00192 579 PRINTS Lysyl-tRNA synthetase signature 291 304 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Phco9g00192 579 MobiDBLite consensus disorder prediction 37 59 - -
Phco9g00192 579 MobiDBLite consensus disorder prediction 498 527 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00192 Phco-Chr9 1246009 1255923 Dispersed