Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00182 ATGAATTCCCTCCTTCCCCAAACCCAACTTTCTGCTCCAATGAATTCAAAATCCAAACTTTGGACGAAACCAACTTCAACATCAACCAGCTGTAGCAGTAGCAGTAGCAGCAGCATCAGCAGTGAGAACGATGACAGCCCCTTTTGTTCCCAACGCATACCCATCGTTGTTTCTGCCTTTTTCAATTCTCACCGATCACTCGCAGTTCTTTCCGGCCACGTGGGTTCCGTTTCATGCTTGGCCCTGTGCGGTGAGTTCATCCTGAGTGCATCTCAGGGTAAGGATATCATAGTCTGGCAGCAACCGGACTTGAGGCTCTTTGCGAAGTTCGGACAAGGAGCAGGGTCGGTGAAAGCACTTGCGACGGTTGGCAACAAGGTTTTCACCGCACATCAAGATAGCAGGATCCGAGTTTGGAAGGTGTCAAGAAGCTCGGAGAACGTGTTCAAGCTTGTTGATTCTCTTCCCACAACCAAGGACTATTTGGGGAAGTTCATGAAGCAGAGCAACTATGTCCAAACTCGGAGGCACCACAAGCGTTTGTGGATTGAGCATGCAGATAGCATTTCTTGCTTGACGGTTCATAATGGGTTGATTTATTCTGGGTCGTGGGATAAGACTCTAAAGGTGTGGAGGCTCTCGGATTTGAAGTGTTTGGAGTCAGTTAAGGCTCATGATGATGCAATCAATGGGTTGGTGGCGTGTAAAGGGGTGGTGTATTCTGCTTCTGCCGATGGAAAGATTAAGGCTTGGGGGAGAAAAGAGGGGAAGGAGGAGCATTGTTTGAAGGGGGTTTTGGAGGGTCATAAGGATGTTTCTTTTAATGCTGTTGTTGTTTCTGAGGATGGGAAGTGGGTTTACGGAGGAGGATCCGATGGGTTTGTGATGGGGTGGGAGGGGAATGGGGCTTCTGAGACTTGGAAGCTGGTTTCTGAGTCCAAGGCACATGACATGGCTGTGTTGTGCATGTGTCTAATGGGGGAGTTTTTGTGCAGTGGTTCAGCGGATAAAAGCATAGGGATTTGGAGGAGAGAGGCTTTTGGTAAGCTTTGTAAAGTTGGTGTCATAAGTGGCCATGAAGGTCCTGTGAAGTGTTTGCAAGCCTCGTCTAGTAGGATTGGTGGTGGTTTTTTATTGTACAGCGGAAGCCTTGATAAAAGTGTGAGAGTTTGGTGGGTTCCAAGGTATAATGATGCAGAAGTGGAGGATAACAGATGTACACAATTTGGCACAGAGAATAAGTCCATCCTCCCATGCTAG 1260 0.4786 MNSLLPQTQLSAPMNSKSKLWTKPTSTSTSCSSSSSSSISSENDDSPFCSQRIPIVVSAFFNSHRSLAVLSGHVGSVSCLALCGEFILSASQGKDIIVWQQPDLRLFAKFGQGAGSVKALATVGNKVFTAHQDSRIRVWKVSRSSENVFKLVDSLPTTKDYLGKFMKQSNYVQTRRHHKRLWIEHADSISCLTVHNGLIYSGSWDKTLKVWRLSDLKCLESVKAHDDAINGLVACKGVVYSASADGKIKAWGRKEGKEEHCLKGVLEGHKDVSFNAVVVSEDGKWVYGGGSDGFVMGWEGNGASETWKLVSESKAHDMAVLCMCLMGEFLCSGSADKSIGIWRREAFGKLCKVGVISGHEGPVKCLQASSSRIGGGFLLYSGSLDKSVRVWWVPRYNDAEVEDNRCTQFGTENKSILPC 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00182 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 221 IPR001680 GO:0005515
Phco9g00182 419 Gene3D - 268 413 IPR015943 GO:0005515
Phco9g00182 419 SUPERFAMILY WD40 repeat-like 64 395 IPR036322 GO:0005515
Phco9g00182 419 Pfam WD domain, G-beta repeat 264 298 IPR001680 GO:0005515
Phco9g00182 419 Pfam WD domain, G-beta repeat 353 391 IPR001680 GO:0005515
Phco9g00182 419 Pfam WD domain, G-beta repeat 184 211 IPR001680 GO:0005515
Phco9g00182 419 MobiDBLite consensus disorder prediction 14 45 - -
Phco9g00182 419 CDD WD40 66 391 - -
Phco9g00182 419 PRINTS G protein beta WD-40 repeat signature 127 141 IPR020472 -
Phco9g00182 419 PRINTS G protein beta WD-40 repeat signature 379 393 IPR020472 -
Phco9g00182 419 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Phco9g00182 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 356 391 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 103 140 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 306 343 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 215 252 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 259 299 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 349 392 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 175 212 IPR001680 GO:0005515
Phco9g00182 419 SMART WD40_4 63 100 IPR001680 GO:0005515
Phco9g00182 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 356 391 - -
Phco9g00182 419 Gene3D - 171 267 IPR015943 GO:0005515
Phco9g00182 419 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 26 395 IPR045182 -
Phco9g00182 419 FunFam BnaA09g28200D protein 172 256 - -
Phco9g00182 419 Gene3D - 25 164 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00182 Phco-Chr9 1190837 1192096 Transposed