Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00170 ATGGATGGTTACGAAGCTACTAGAATTGTGTTTGCAAGGATCCAAAACTTGGACCCTGAAAATGCGTCCAAAATCATGGGTGTACTTCTTCTTCAAGACCATGGTGAGAAGGAAATGATTAGATTAGCATTTGGCCCAGAAGCACTTGTTCACTCTGTGATTCTCAAAGCTCGCAAGGAGTTAGGTTTACCTTCGAACTCTCCGCCAACGCCCTCTACTCCCCCTTCTCCTTCGCCCTTCCTTTCGAGGCAAAGCTCCACTTCTTCCAGGCTTGGTGCTATCAACCTACCTCCTGCTCTCACCATTCCAAACCCTTCTTCCACTTCTTCTTCATGGCCTACTATGTCTGAGCTTCAAACCCCAGATGGTTTGATGAGCCCCAATCATTTGGTTGTTGGCTCTTCTACTTCTTCATCTTCCTTGCCCTTTTATGTCAACGGAGGCCCAGATTCAATTGATGACTTCCAACTTCAGGATCAGCTTTCTTTCCTTAATGATGGTTCTCCTACTAGTACTGCTCTTGCTCACAAGAGCAACCCAGATTTGTTTTACCCAACTCACTCAGACTTGTCCTCAAGTCCTACTGCTGTTGCTGACCCTGCTCTCTTTCCTTCCTACGGTTGGGGAGGGTCTCTTCATAGAAGGAGTTGCTCAGTCAATGATGCTTGTTTAGGCTCTGAGGACCCCAACTCCGGGTTGGGCTGGAAACCTTGCCTTTACTTTGCTAGAGGGTACTGTAAAAATGGGACAAGTTGCAGGTTCCTTCATGGTGGACTTGGAGAAGCAGATGGTCCTGCTGCAATGGTAGGGTCTCCGAGCAAGATTGAGATGATGGAGCAGTGCCATGAGCTCTTCAGATCCAAATCTTCTCAGCAGCACAGATTGGCTGCTGCTTCTCAGCTCATGGCCTCTTCCACTTTTCCATACTCACCTAAGTGCATGAATTTGCTGTTACAGCAGCAACAGAACGATACTCAAAGAGCGGCAGCTGCAGCTCTGATGATGTGTGAGGATTTGCATAAATTTGGACGATCTAGGCTTGAAAGAAATGATTTTTCTCTGAACAGTCCTGGAATGGTAAACCCAGCTTCCCGGCAGATCTACTTGACTTTTCCAGCAGATAGCACTTTCAGAGAGGAAGATGTTTCAAATTACTTCAGCATTTATGGCCCAGTCCAAGACGTGAGGATCCCGTACCAGCAGAAGCGAATGTTTGGCTTTGTGACCTTTGTTTATCCTGAGACTGTGAAGCTAATTCTATCTAAAGGAAATCCCCATTTTGTGTGTGATGCTAGAGTGCTTGTTAAGCCTTACAAGGAGAAGGGCAAAGTCCCGGACAAGAAGCAGCAGCAGGTTGATAGAGGAGATTTTTCACCATGTGGTACTCCTACCGGACTGGAGACCAGAGACCAATTTGATCTTCAACTTGGAGGCAGAATGTTCTACAATGCTCAAGACATGCTGTGGAGGAGGAAGCTGGAGGAGGAAGCTGATTTGCAGCACGCTCTTGAGTTACAAAGTAGGAGGCTAATGGGTCTGCAACTTCTTGACATCAAGAAGCATCACCAGCGTGCACTCTCCACTGGAAGTCCAATTCCTTCCCCAACCCACTCTCCTAACATGTTCAACCAAAATCTTGTTCTTCCTTCCTTTCACACTAGTTCAGAGACCCCAAAGGAGACTAGTTCATCTTCTGCTCCAGCTAGTACTGTATCGGTTTCTGCTGGTCAGCAGCCGGTCAACATATCTGTTGGCAAGGAAATGGTGGTCAATGGAGAGAATGGATATAATGAAGGCAATGGGAAGCAGAGCCCTAGTCATGAAGATCGTGAATTGCAAGAATGTTTGGAGCATAATCTCCCTGATAGCCCTTTTGCTTCCCCAACAAAAGCTGCTGGTGACTTCATGGTTTCCTTCTCCAATGGACCTAACGAGGCCATTGATGCAGATGCCTCAGGTGCATCTGCCAACTCTAAATTTGGTACTAGCGCATTACTTCCACCAGCTTCTGCTCTTGACATGGGAACTTTTAAATCCTATAACTGCCAAATACCAAGGTTCTCTTCTGTTTCCTGTTGTTCAGGAAGTGATAGATGA 2097 0.4654 MDGYEATRIVFARIQNLDPENASKIMGVLLLQDHGEKEMIRLAFGPEALVHSVILKARKELGLPSNSPPTPSTPPSPSPFLSRQSSTSSRLGAINLPPALTIPNPSSTSSSWPTMSELQTPDGLMSPNHLVVGSSTSSSSLPFYVNGGPDSIDDFQLQDQLSFLNDGSPTSTALAHKSNPDLFYPTHSDLSSSPTAVADPALFPSYGWGGSLHRRSCSVNDACLGSEDPNSGLGWKPCLYFARGYCKNGTSCRFLHGGLGEADGPAAMVGSPSKIEMMEQCHELFRSKSSQQHRLAAASQLMASSTFPYSPKCMNLLLQQQQNDTQRAAAAALMMCEDLHKFGRSRLERNDFSLNSPGMVNPASRQIYLTFPADSTFREEDVSNYFSIYGPVQDVRIPYQQKRMFGFVTFVYPETVKLILSKGNPHFVCDARVLVKPYKEKGKVPDKKQQQVDRGDFSPCGTPTGLETRDQFDLQLGGRMFYNAQDMLWRRKLEEEADLQHALELQSRRLMGLQLLDIKKHHQRALSTGSPIPSPTHSPNMFNQNLVLPSFHTSSETPKETSSSSAPASTVSVSAGQQPVNISVGKEMVVNGENGYNEGNGKQSPSHEDRELQECLEHNLPDSPFASPTKAAGDFMVSFSNGPNEAIDADASGASANSKFGTSALLPPASALDMGTFKSYNCQIPRFSSVSCCSGSDR 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00170 698 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 631 - -
Phco9g00170 698 MobiDBLite consensus disorder prediction 79 116 - -
Phco9g00170 698 SMART rrm1_1 366 436 IPR000504 GO:0003723
Phco9g00170 698 CDD RRM_AtC3H46_like 367 436 IPR034365 -
Phco9g00170 698 FunFam zinc finger CCCH domain-containing protein 53-like isoform X2 372 443 - -
Phco9g00170 698 MobiDBLite consensus disorder prediction 61 116 - -
Phco9g00170 698 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 422 IPR000504 GO:0003723
Phco9g00170 698 Gene3D - 226 307 - -
Phco9g00170 698 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 257 IPR000571 GO:0046872
Phco9g00170 698 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 365 441 IPR000504 GO:0003723
Phco9g00170 698 SMART c3hfinal6 234 258 IPR000571 GO:0046872
Phco9g00170 698 Gene3D - 312 456 IPR012677 -
Phco9g00170 698 MobiDBLite consensus disorder prediction 527 581 - -
Phco9g00170 698 SUPERFAMILY RNA-binding domain, RBD 377 451 IPR035979 GO:0003676
Phco9g00170 698 SUPERFAMILY CCCH zinc finger 235 257 IPR036855 GO:0046872
Phco9g00170 698 MobiDBLite consensus disorder prediction 442 468 - -
Phco9g00170 698 MobiDBLite consensus disorder prediction 524 611 - -
Phco9g00170 698 ProSiteProfiles Zinc finger C3H1-type profile. 232 259 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00170 Phco-Chr9 1122733 1125782 Dispersed/Proximal