Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00128 ATGGCCAGAATTTCTTCGGAGGAGAAGGTTTTTCCATCAAATCTAAGGGTTCTTGCCATTGACATTGACCCTTCAGTTCTTGAATTCGTCAAGAAAACATGCAATGAATGTTGTTATCAAGTTATGACATGCACAGAATCGCTACGTGCTGTTGATATTTTTAGGGACAGAAAAATGAGTTTTAATTTGGTGCTGATGGAGGTTCATATGCCAAATATGGATGGATATGAATTCCTTGTGAACCAGAAAATTGATGTTCCTGTCATCATGATGTCTTTTGATGATGATAAGAAATCTGTAATGAAGGCTATTAAACTTGGAGCTTGTGATTATTGGATCAAGCCTTTGCATGAGGATCGAATCAAGAATATGTGGGCACATGTTGTTAGGAAGTCCATGAGTGAGAATAAGATGCAGAAAGACATTATTGTCAACTTGGAAGATGATGATGATCAGAGAAGAATGATTAGTAGTGATGATTCTAACTTTGTTTTTTCTTCTACTGTTGAAATTCCAAGAAAAGTTGATAATGTTGGTGAATCTGAGAGATGTGCCAGAAAGAAGTCTCGTATAGTATGGACATCAGAACTGCATCGTAAATTTGTTGAAGTTGTGGATCAAATTGGACCTGCTAATGTTGTGCCAAACAAAATTCTTGAACTCATGAACATGCCTGGTTTGACAAGAAACAATGTTGCTAGTCATTTGCAGAAATATAGAAATGCTTTAAAGGCAAGATCTGATAAAGAAAAACATAGTCAACAACAACTACTACAGAAAGAGGTGTCAAGGACTATATCATCTACAAGAGCAGATCTTTATCCTGGTATCACAGGTTTGGTCCCAAAAAGAGAGCATCAATCTCTCTCAGACATGCAACTGCAACTGGATAACCATTTTCAAGCAGAACAAGCTTTGGTTTTGGCACATGGTTACCCCTTCACTACCTATTATCCTAACACTGTTATTCCCCAGAATTTTCCACACTCCATTGGGACTCTAGATGATGCATCTACACATGGACTATGGTCTTCATATAATACAGTGTTTGCTGAAAATCAAGCTATTTTTAAACATTACAATATGATCTTCCATACATCTTATACATGCCTTGCAAAGGCAATTCCAGCTACGTTGGTGCTTTTGCTGACTATGTCTGAAGGCACTTCAGGACTCACACAAGCTGATGCACTTCTTAGGTGGAAACAAAGTCTACCTCACCAACCCATTATGGATTCCTGGGTCATCAACTCCACTGCAACAACTCAAACTCCATGTTCATGGCGAGGTATCACTTGTGATTCCCAAGGCACTGTCACTATAATAAACTTGGCTTATACTGGACTTGCAGGTACCCTTCACAATTTGAACTTTTCTGTTTTTCCCAACCTTCTTCGTCTTGACCTCAAAGAAAACAACCTCACTGCCTCCATACCACAAAACATTGGGGTGCTCTCAAAACTCCAGTTCCTTGACCTTTCCGACAACTATCTCAATGGCACTTTGCCTCTTTCCATTGCCAATCTGACTCAAGTTTTTGAGCTTGATGTTTCAAGAAATGATATATCAGGGGTATTAGACCCTGCCCTTTTTCCTGATGGATCTCACACCCCCAAAACTGGCCTCATTGGCATCAGGAACCTTCTCTTCCAGGACACCTTGCTAGGTGGCAGAATCCCAAATGAAATAGGGAACATTAGAAACTTGACTCTGCTAGCTCTAGATGGAAACAACTTCCATGGTCCTATTCCCCCATCTCTGGGCAACTGCACACATTTAAGCATTCTTAGATTGCCTCAAAACCAACTCTCAGGCCCAATACCTCCAAGTATTGGTAAATTAACCAATCTAACCGATGTGCGCCTTTTCACCAACAACTTAAATGGTACTGTTCCCCAAGAATTTGGAAACTTGTCTTCCTTGATTGTGCTGCATCTTGCTGAGAACAACTTTGTTGGTGAATTACCACCACAAGTGTGCAAAAGTGGTAAACTTGTAAATTTTAGTGCAGCCTTTAATAGCTTCACTGGCCCAATTCCAAGAAGCCTTAAAGACTGTCCTTCCTTGTACAGGGTTCGACTTGAATACAATCGGCTGACAGGTTTTGCGGATCAGGATTTTGGAGTGTATCCCAACCTCACTTACATGGACTTCAGCCATAATAGGGTGAAAGGTAACCTCACTGCAAATTGGGGTGCCTGCCAAAACCTGCAATATCTCAGCATGGCTGGGAATGGAGTAAGTGGCAACATTCCAAGTGAGATTTTTCAGTTGGAACAACTACAAGAGCTTGATCTATCCTCCAACCAAATATCAGGAGAGATTCCTCCACAGATAGGAAACTCAACCTTGTATGAATTAAATTTGAGTGAAAACAAACTCTCTGGCATGGTACCAGAAGAAATTGGAAAGCTTTCCAATTTGCGATCCTTAGACCTCTCTATGAACATGCTACTGGGACCAATCCCCCATCAGATAGGGGAGATCTCCAACTTACAGAATTTAAATCTTAGCAACAATAACTTTAATGGCTCAATCCCCTACCAAGTTGGAAATCTTGCATCTTTGCAAGATTTTTTGGACTTGAGTTACAATGAACTTTCAGGAGAAATTCCTTCTGATCTTGGGAAGCTTTCAAATTTGGTAAGCTTGAATATCTCTCACAACAATCTGTCAGGTCCAATCCCCGACTCCCTTAGTAAAATGGTGAGTTTGTCAGCCATCAACCTATCGAACAACAACTTGGAGGGTCCAGTTCCCATTGGTGGCATATTCAACTCTTCTTATCCCGTGGATTTGAGCAACAACAAAAATTTATGTGGGAATATTCAAGGTTTGCAACTCTGTAATGTCTCTCTCACTAAACCTGATGGTGGTGGATCAAGTAAAAGGAACAAGGCTGTGATCCTTATTGTGGCTTCCCTGGGAGGTGCTCTTTTTATTTCTTTGGTGTTAGTTGGGATTTTTTTCTTTTTCTATAAGAGAAAATCAAGAGCTCCGAGACAAAGAAACTCGTTCAGTAGACCGAATCCATTTTCAATTTGGTACTTCAATGGGAGAGTTGTGTATAGAGACATAATTGAAGCTACCAAGAACTTTGACAGCCAATATTGCATTGGGGAAGGAGCACTGGGAAAAGTTTATAAAGCTGAGATGTCAGGAGGTGAAGTATTTGCTGTAAAAAAGTATAAGTGTGATTCAGAAAACTTAGACATGGAGAGAATAAAATCCTTTGAGAATGAGGTAGAAATCTTGACAGAAACACGCCACAGAAACATTGTCAAGCTTTATGGATTTTGCTCTCAAGGGATGCACACCTTTCTAATTTATGAGTACATGGACGGTGGCAACTTAGCTGACATGCTGAGAGATGACAAGGGAGCATTGAAACTTACTTGGCACAAAAGGGTTGATATTATCAAAAGTGTAGCAAGCGCTTTGTCCTACATGCATCATGATTGCGCTTCACCTTTAATTCACAGAGACATATCAAGCAAGAACGTTTTGCTGTCCTTCAATCTTTCAGCTCATGTCTCAGATTTTGGAACTGCAAGGTTTCTGAAGCCGGATTCTCCTATTTGGACATCATTTGCCGGCACATATGGTTATGCTGCTCCAGAGCTAGCTTACACAATGGCGGTGACTGAGAAATGTGATGTGTTCAGCTTTGGTGTTTTGGCTTTGGAGGTTCTTACGGGGAAGCACCCTGGTGAGCTTGTTTCCTACATGCAAAGTTGTAGTGAACAGAAGGTAAATATGAAAGAGATTTTAGACCCTCGTGTCTTGGCTCCTTCCAAGAAGCATGTTTTGAAGCAAGTGGATTTGATTGCCAACATAGCTCTTTCATGTTTAAAGACAAACCCTCAATCTCGACCAACTATGCGAACCATAGCTCAGCTGCTTCAAATGGAAACTGCAGACATATAA 3927 0.4054 MARISSEEKVFPSNLRVLAIDIDPSVLEFVKKTCNECCYQVMTCTESLRAVDIFRDRKMSFNLVLMEVHMPNMDGYEFLVNQKIDVPVIMMSFDDDKKSVMKAIKLGACDYWIKPLHEDRIKNMWAHVVRKSMSENKMQKDIIVNLEDDDDQRRMISSDDSNFVFSSTVEIPRKVDNVGESERCARKKSRIVWTSELHRKFVEVVDQIGPANVVPNKILELMNMPGLTRNNVASHLQKYRNALKARSDKEKHSQQQLLQKEVSRTISSTRADLYPGITGLVPKREHQSLSDMQLQLDNHFQAEQALVLAHGYPFTTYYPNTVIPQNFPHSIGTLDDASTHGLWSSYNTVFAENQAIFKHYNMIFHTSYTCLAKAIPATLVLLLTMSEGTSGLTQADALLRWKQSLPHQPIMDSWVINSTATTQTPCSWRGITCDSQGTVTIINLAYTGLAGTLHNLNFSVFPNLLRLDLKENNLTASIPQNIGVLSKLQFLDLSDNYLNGTLPLSIANLTQVFELDVSRNDISGVLDPALFPDGSHTPKTGLIGIRNLLFQDTLLGGRIPNEIGNIRNLTLLALDGNNFHGPIPPSLGNCTHLSILRLPQNQLSGPIPPSIGKLTNLTDVRLFTNNLNGTVPQEFGNLSSLIVLHLAENNFVGELPPQVCKSGKLVNFSAAFNSFTGPIPRSLKDCPSLYRVRLEYNRLTGFADQDFGVYPNLTYMDFSHNRVKGNLTANWGACQNLQYLSMAGNGVSGNIPSEIFQLEQLQELDLSSNQISGEIPPQIGNSTLYELNLSENKLSGMVPEEIGKLSNLRSLDLSMNMLLGPIPHQIGEISNLQNLNLSNNNFNGSIPYQVGNLASLQDFLDLSYNELSGEIPSDLGKLSNLVSLNISHNNLSGPIPDSLSKMVSLSAINLSNNNLEGPVPIGGIFNSSYPVDLSNNKNLCGNIQGLQLCNVSLTKPDGGGSSKRNKAVILIVASLGGALFISLVLVGIFFFFYKRKSRAPRQRNSFSRPNPFSIWYFNGRVVYRDIIEATKNFDSQYCIGEGALGKVYKAEMSGGEVFAVKKYKCDSENLDMERIKSFENEVEILTETRHRNIVKLYGFCSQGMHTFLIYEYMDGGNLADMLRDDKGALKLTWHKRVDIIKSVASALSYMHHDCASPLIHRDISSKNVLLSFNLSAHVSDFGTARFLKPDSPIWTSFAGTYGYAAPELAYTMAVTEKCDVFSFGVLALEVLTGKHPGELVSYMQSCSEQKVNMKEILDPRVLAPSKKHVLKQVDLIANIALSCLKTNPQSRPTMRTIAQLLQMETADI 1308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00128 1308 SMART serkin_6 1033 1303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00128 1308 PANTHER LEUCINE RICH REPEAT KINASE 2 553 1304 - -
Phco9g00128 1308 SMART REC_2 15 125 IPR001789 GO:0000160
Phco9g00128 1308 Gene3D Transferase(Phosphotransferase) domain 1 1113 1307 - -
Phco9g00128 1308 FunFam Two-component response regulator 184 247 - -
Phco9g00128 1308 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1158 1170 IPR008266 GO:0004672|GO:0006468
Phco9g00128 1308 SUPERFAMILY Homeodomain-like 186 244 IPR009057 -
Phco9g00128 1308 ProSiteProfiles Leucine-rich repeat profile. 760 782 IPR001611 GO:0005515
Phco9g00128 1308 Gene3D Ribonuclease Inhibitor 536 610 IPR032675 -
Phco9g00128 1308 FunFam Leucine-rich repeat receptor-like protein kinase TDR 635 951 - -
Phco9g00128 1308 PRINTS Leucine-rich repeat signature 805 818 - -
Phco9g00128 1308 PRINTS Leucine-rich repeat signature 761 774 - -
Phco9g00128 1308 SUPERFAMILY Protein kinase-like (PK-like) 1006 1302 IPR011009 -
Phco9g00128 1308 Gene3D Ribonuclease Inhibitor 611 706 IPR032675 -
Phco9g00128 1308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 185 244 IPR017930 -
Phco9g00128 1308 SUPERFAMILY CheY-like 13 140 IPR011006 -
Phco9g00128 1308 Gene3D Ribonuclease Inhibitor 392 535 IPR032675 -
Phco9g00128 1308 Gene3D - 184 245 - -
Phco9g00128 1308 Pfam Response regulator receiver domain 17 124 IPR001789 GO:0000160
Phco9g00128 1308 Gene3D Ribonuclease Inhibitor 823 949 IPR032675 -
Phco9g00128 1308 Gene3D Ribonuclease Inhibitor 707 822 IPR032675 -
Phco9g00128 1308 FunFam MDIS1-interacting receptor like kinase 2 1113 1307 - -
Phco9g00128 1308 FunFam Leucine-rich repeat receptor protein kinase MSP1 995 1112 - -
Phco9g00128 1308 Gene3D - 14 144 - -
Phco9g00128 1308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 188 241 IPR006447 GO:0003677
Phco9g00128 1308 Pfam Myb-like DNA-binding domain 193 240 IPR001005 -
Phco9g00128 1308 SUPERFAMILY L domain-like 423 773 - -
Phco9g00128 1308 CDD REC_typeB_ARR-like 17 129 - -
Phco9g00128 1308 ProSiteProfiles Response regulatory domain profile. 16 129 IPR001789 GO:0000160
Phco9g00128 1308 Pfam Leucine rich repeat N-terminal domain 393 434 IPR013210 -
Phco9g00128 1308 ProSiteProfiles Protein kinase domain profile. 1033 1306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00128 1308 SMART LRR_typ_2 638 662 IPR003591 -
Phco9g00128 1308 SMART LRR_typ_2 805 829 IPR003591 -
Phco9g00128 1308 SMART LRR_typ_2 758 782 IPR003591 -
Phco9g00128 1308 SMART LRR_typ_2 461 485 IPR003591 -
Phco9g00128 1308 SMART LRR_typ_2 509 533 IPR003591 -
Phco9g00128 1308 SMART LRR_typ_2 878 902 IPR003591 -
Phco9g00128 1308 FunFam Predicted protein 538 626 - -
Phco9g00128 1308 FunFam Nuclear pore complex protein NUP107 392 531 - -
Phco9g00128 1308 Pfam Protein kinase domain 1038 1299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00128 1308 SUPERFAMILY L domain-like 711 941 - -
Phco9g00128 1308 Gene3D Phosphorylase Kinase; domain 1 999 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00128 Phco-Chr9 831153 839585 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco9g00128 Pkinase 1.1e-47 CL0016
TF GARP-ARR-B Phco9g00128 Pkinase 1.1e-47 CL0016