Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00126 ATGGAAGAGGAGGGGTGGAACGGGAAGAGATCCTCCGAGCCACGTCCCTGCACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCACTCTTCGGCCACATGCGATGCCACCCAGAGCGTCACTGGAGAGGGATCAACCCTCCCCCCAATGCAAAAAGACATCATCAGCATCAGCAGCAACAACAACAGATGACCATGATAATGACCCAGGAAGACCACGAGGTCGCTGCCTCTTTGCTTCTGCTTGCCAATTCCAACAATAACAAAGAGAAAGAGAAAGAGAAAGAGAAAGGGAAAGAGAAAGAGGAAGAGTTTCATCAGTGGCAGTTCGAGTGCTCCAGTTGCAACAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCAAACACTGGTAATGCAGGCATAGGCATGGGCATAGGTTTAGGCATAGGAAGTAGTGGGAAGTGTGATGAGGAGAATGTTAACATGAGTGGTGATGGGCACAAGTGCAGCATATGCATGAGGGTGTTCTCCACAGGGCAAGCACTTGGTGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGTGATAACCTTCTTCTTCTTCACTCACCCAAGTCCTCCATAGACTTGAACTCTCCTCCTCTCACTCTCGATTTGAGGTTGGGACTCTAG 690 0.5116 MEEEGWNGKRSSEPRPCTECGKKFWSWKALFGHMRCHPERHWRGINPPPNAKRHHQHQQQQQQMTMIMTQEDHEVAASLLLLANSNNNKEKEKEKEKGKEKEEEFHQWQFECSSCNRVFGSHQALGGHRASHKNVKGCFANTGNAGIGMGIGLGIGSSGKCDEENVNMSGDGHKCSICMRVFSTGQALGGHKRCHWENQKGDNLLLLHSPKSSIDLNSPPLTLDLRLGL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00126 229 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 11 222 - -
Phco9g00126 229 SMART c2h2final6 173 195 IPR013087 -
Phco9g00126 229 SMART c2h2final6 110 132 IPR013087 -
Phco9g00126 229 SMART c2h2final6 15 37 IPR013087 -
Phco9g00126 229 SUPERFAMILY beta-beta-alpha zinc fingers 171 198 IPR036236 -
Phco9g00126 229 SUPERFAMILY beta-beta-alpha zinc fingers 13 40 IPR036236 -
Phco9g00126 229 Pfam C2H2-type zinc finger 110 133 - -
Phco9g00126 229 Pfam C2H2-type zinc finger 16 39 - -
Phco9g00126 229 Pfam C2H2-type zinc finger 173 197 - -
Phco9g00126 229 ProSitePatterns Zinc finger C2H2 type domain signature. 175 195 IPR013087 -
Phco9g00126 229 ProSitePatterns Zinc finger C2H2 type domain signature. 17 37 IPR013087 -
Phco9g00126 229 ProSitePatterns Zinc finger C2H2 type domain signature. 112 132 IPR013087 -
Phco9g00126 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 173 200 IPR013087 -
Phco9g00126 229 Coils Coil 82 104 - -
Phco9g00126 229 Gene3D Classic Zinc Finger 107 195 - -
Phco9g00126 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 37 IPR013087 -
Phco9g00126 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00126 Phco-Chr9 823223 823912 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g00126 zf-C2H2_6 6.7e-11 CL0361