Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00095 ATGGCTCGCGGAAAGGTTCAGCTTAAGAGAATTGAGAACCCAGTGCACAGACAAGTCACCTTCTGCAAGCGCCGAGCTGGGCTTCTTAAGAAGGCTAAGGAGCTCTCTGTGCTGTGCGATGCTGAAATTGGTCTTTTCATTTTCTCCGCCCATGGAAAACTCACTGAACTAGCCACCAAAGGAACTATGCAAGGCCTGATTGAGAGGTACGTGAAGTTCACACGAGGGACTCATCCTGAAGCACCACCCCAACCACTTCTTCTGGATGCAAAAGAGGAATCTAACGTGCTGAAACAAGAAATCCAAAAACTGCAAAAGAGTATCAGGTATTTGTTTGGAGTTGGAAACAAGACTTCGACCATGGATGAACTACAAGTGCTAGAGAAGAATTTGGAAACTTGGATATATCATATTCGCTCAATGAAGATGAACATCATGTTACAAGAAATCGAAGCATTGAAAGACAAGGAGGGAACACTTACAGAGGCAAATAAATATCTCCATGCTAAGATTGTGGAGAATACTGCAATTCATAACTTGGTTCAATTTTCTACAGATGCTTCATACCCACTGATTATACAAGATGGGAGTTTTCAACTCTATCAATGA 609 0.4236 MARGKVQLKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLFIFSAHGKLTELATKGTMQGLIERYVKFTRGTHPEAPPQPLLLDAKEESNVLKQEIQKLQKSIRYLFGVGNKTSTMDELQVLEKNLETWIYHIRSMKMNIMLQEIEALKDKEGTLTEANKYLHAKIVENTAIHNLVQFSTDASYPLIIQDGSFQLYQ 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00095 202 Coils Coil 87 107 - -
Phco9g00095 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco9g00095 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Phco9g00095 202 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco9g00095 202 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Phco9g00095 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 147 - -
Phco9g00095 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco9g00095 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco9g00095 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco9g00095 202 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Phco9g00095 202 Pfam K-box region 91 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco9g00095 202 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Phco9g00095 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00095 Phco-Chr9 631377 635088 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco9g00095 K-box 2e-20 No_clan