Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00094 ATGGTAGGGACTAAGAATGAAGGAGGGGGCCACCATGCCTCATTTGTGTGTGAGGGAATGCATATGCATGCCTTTTCCGCAAAAGCGAGAGGGGTTGGCTGTTCCATTACGTCACCACCATTGCCCCTACGAATTTTGTTTACTCTTTTTAGTGCCTTGTGGCAACCCTTTAAGATTGTTAACCTACTTTTCCAGAAACAAAGAGAACTATCTCCGGCGTCGATCCTCAGACGTTGCCGCTTTCCCTTCTTCTTTTATGCCTTTTCCACCTCGGGATCCGATCCCACAAGTAAAACACAGAAAGACAGGAAGAGAGGAGGAAAACAGGGAGATAATTCAGGACTGAGGGAGAACATGGATACTTTCAGTCATGTCCCCCCCGGTTTTAGGTTCCATCCAACGGATGAAGAACTTGTTGATTACTACCTTCGGAAGAAAATGGCTTCAAGGAGGATTGACATGGATGTCATAAAAGATGTTGACCTCTACAAAATAGAGCCATGGGATCTTCAAGAGATTTGCAGAATAGGAACGGAAGAGCAAAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACTGCAGCAGGGTTTTGGAAAGCAACAGGAAGAGACAAGGCAATCTATTCCAAGCATGACCTGATAGGCATGAGGAAAACCTTAGTCTTTTACAAAGGTCGAGCTCCAAATGGACAAAAGTCAGATTGGATAATGCATGAATATCGGCTTGAAACAGATGAAAATGGCACTCCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAGAAGAGAGTAACAACGATGCGTAAAGTGAGTGAACAGGATTCTCCCGGTTGGTATGATGATCAAGTATCTTTCATTCAAGACATGGACTCACCCAACAACACCTCTCAATCTAACTTGGTCTACCAGCTTCCCTATCCTTGCAAGAAAGAGCTAGATTTGCCCTATCAGGTCCCTCGCGACCACTTCCTCCAGCTTCCACTTCTAGAGACCCCAAAACTGCTTCAATCTGCTTCAGCCATAGCTCCTAATCCCATGCCACCATATCTTCTAGATCATGTGAACCACTCCACTACTCTGCTTCCCTCATTACTCATACAAGAAGAACAGGTTATTACTCAGCAAATAAACTTTCAGGCAACTTATGGCAACACCAACTCCAATGAACCAGCACTGGATCAAGTAACTGATTGGCGAGTGCTTGACAAGTTTGTTGCTTCACAACTCAGTCAAGATGCATCCAAAGTCAACACCTACACAAACTCCACAGCCAATATCTTTCACGGCACGGACAATGGCAATTGCAATGTACAGTTCAGACATTTGGAGAAACAAGAGATAGTGGTGCCTCAAGAAAATGCCTCAACATCGAACTCTAGCTGCCCAATTGCATTGTGGAAATAG 1440 0.4424 MVGTKNEGGGHHASFVCEGMHMHAFSAKARGVGCSITSPPLPLRILFTLFSALWQPFKIVNLLFQKQRELSPASILRRCRFPFFFYAFSTSGSDPTSKTQKDRKRGGKQGDNSGLRENMDTFSHVPPGFRFHPTDEELVDYYLRKKMASRRIDMDVIKDVDLYKIEPWDLQEICRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDENGTPQEEGWVVCRVFKKRVTTMRKVSEQDSPGWYDDQVSFIQDMDSPNNTSQSNLVYQLPYPCKKELDLPYQVPRDHFLQLPLLETPKLLQSASAIAPNPMPPYLLDHVNHSTTLLPSLLIQEEQVITQQINFQATYGNTNSNEPALDQVTDWRVLDKFVASQLSQDASKVNTYTNSTANIFHGTDNGNCNVQFRHLEKQEIVVPQENASTSNSSCPIALWK 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00094 479 Pfam No apical meristem (NAM) protein 126 253 IPR003441 GO:0003677|GO:0006355
Phco9g00094 479 ProSiteProfiles NAC domain profile. 125 274 IPR003441 GO:0003677|GO:0006355
Phco9g00094 479 SUPERFAMILY NAC domain 123 274 IPR036093 GO:0003677|GO:0006355
Phco9g00094 479 MobiDBLite consensus disorder prediction 97 111 - -
Phco9g00094 479 FunFam NAC domain-containing protein 134 278 - -
Phco9g00094 479 MobiDBLite consensus disorder prediction 92 118 - -
Phco9g00094 479 Gene3D NAC domain 134 277 IPR036093 GO:0003677|GO:0006355
Phco9g00094 479 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 124 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00094 Phco-Chr9 623708 627903 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco9g00094 NAM 1.8e-37 No_clan