Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00068 ATGGCCAAGAGTCCCTGTCTCTTACCCTTTTTCCAGTTCTTGGCAGTGCTCTTTCTCACCTTCTACTCTATTTTCCAGCCTTGTGTGTCTCTGACATTGGAAACCCACGCTCTTTTTCAGTTCAAGAACCATTTGAAGGACTCCTTGAATTATTTAGCTTCCTGGAATGAATCAGACTCTCCATGTGAGTTTTATGGAATTACATGTGATCAAGTTTCTGGGAGAGTCACAGAAATCTCACTGGGCAATAAGTCCCTCTCTGGTATCATTTTCCCATCACTCTCAGTTTTGCAGAGCCTGCAAGTTTTCTCACTACCATCCAATTTCATTTCCGAAAAGCTTCCAGCAGAAATAAGCAGGTGGACCAACCTCAGAGTGTTGAATCTATCAGGAAATCAATTGGTTGGAGCAATCCCAGACTTCTCTGGACTGAGAAACCTGCAAATTCTTGACCTTTCAGCAAACTACTTTTCTGGAAGCATCCCTAGCTGGGTGGGGAATCTAACCGGCCTGATTTCACTGGTTCTTGGGGAAAATGCATACAATGAAGGTGAGATTCCAGGGACTCTTGGAAATCTGAAGAACTTGACCTGGCTTTATCTTGGTGGCTCCCACTTGATAGGAGAGATTCCAGAATCATTGTATGAAATGAAGGCATTGGAGACACTGGATATTTCAAGAAACAAAATCTCTGGAAGACTCTCCAGATCAATTTCCAAGTTAGAGAATCTTTACAAGATTGAGCTCTTCTCAAATAATTTGACAGGAGAGGTTCCAGCAGAGCTTGCAAACCTCACCAATCTGCAGGAGATTGACCTTTCTGCAAACAACATGTATGGTAGGTTGCCAGAGGAAATTGGGAATATGAAGAACTTGGTTGTTTTTCAATTATATGAAAACAGATTTTCTGGAGAACTTCCTGTAGGATTTGCAGATATGCGTCATCTCATTGGGTTCTCAATATATAGAAACAGCTTCACTGGGACAATTCCAGAAAATTTTGGCCGGTTTTCAGCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGCGATTTCCCAAAGTTCTTGTGTGAAAGAAGTAAGTTGAAGTTTTTGCTCGCATTGCAAAACAATTTATCAGGAACTTTTCCGGAGTCTTATGTTACATGTAAATCTCTGGAGAGATTTAGGATCAGTATGAACCAGTTATCTGGGAAAATTCCAGATAAGGTTTGGGCACTTCCATATGTAAAAATAATTGATTTGGCCTATAATGATTTCACTGGTGTTGTACCTTCAGAAATTGGGTTGTCTACTAGCTTAAGTCAGATAGTTTTGACAAAAAACAGGTTTTCAGGTAAGCTCCCATCAGAGCTTGGCAAGCTGGTGAACTTGGAGAAGCTTTACTTGAGCAATAACAATTTTTCTGGTGAAATACCACCTGAAATTGGATCCCTGAAGCAGTTATCCTCTTTGCATGTAGAAGTGAATTCCTTAACTGGTTCAATACCACCAGAACTGGGTCATTGTGCAAGACTGGTGGACTTGAATCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAATTTCACTTATGAGCTCATTGAACTCTCTTAACATATCTGGAAACAAACTTACAGGTTCTATTCCAGATAATTTAGAAGCCATAAAGCTAAGCTCGGTGGATTTTTCTGAAAATCTGCTTTCTGGAAGAATTCCATCTGGTCTTTTTATTGTTGGAGGAGAGAAAGCTTTTCTTGGAAACAAGGGGCTGTGTTTTGAGGGAAACCAAAAACCTTCCCTGAATTCTGATTTGAAGATTTGTGCCAAATATCATGGTCAGCCAAGGGTCACTGCTGATAAATTTGTCTTTCTCTTTATCATTGCTTCTATTTTTGTTGTTATTTTAGCTTGTTTGCTGCTTTTGAGTTGGAAAAGCCTCAAGCGTGGTGCAGAAAACAACATGCAACGTCAGAGGGAAGTAAATCAAAAATGGAAACTTGCGTCTTTCCACCAAGTAGATATCGATGCTGATGAAATATGTAATCTGGATGAAGATAATTTGATAGGTAGTGGTGGCACAGGAAAGGTTTATCGAGTGGAGTTAAGGAAAAATAGAGCCATGGTGGCTGTCAAGCAACTAAGGAAAATAGATGGTGTGAAAATTTTAGCTGCAGAGATGGAAATTTTGGGGAAAATTAGGCATAGAAATATACTTAAACTCTATGCTTCTTTACTTAAAGGAGGATCCAACCTTTTAGTGTTTGAGTACATGCCAAATGGTAATCTTTTTCAAGCTCTCCATGGACAGATAAAAGATGGTAAGCCAGAGTTGGATTGGAAACAGAGATATAAAATTGCTCTGGGATCTGCGAAAGGAATTGCCTATTTACACCATGACTGTAATCCGCCCGTTATTCATAGGGATATAAAATCCAGCAACATTTTGCTTGACGAGGATTATGAGCCAAAAATTGCTGATTTTGGTATTGCAAGGTTTGCTGAAAAGTCTGATAAGCAGTTGGGTTATAGCTGTCTAGCTGGCACACTTGGTTATATTGCTCCAGAACTTGCATATGCCACTGACATCACTGAAAAGAGTGATGTTTATAGCTTTGGAGTGGTACTGTTAGAATTAGTGTCAGGCAGAGAACCCATTGAAGAGGATTATGGAGAGGCGAAGGATATCGTTTATTGGGTTTTGACTCATCTGAATGACCGTGAAAGTATTCTCAACATTCTTGATGAAAGGGTGGCATCTGAGTGTGTTGAAGATATGATGAAAATGTTGAAGATTGGCATCAAGTGCACCACTAAGCTTCCATCTGTGCGTCCCACCATGAGAGAGGTTGTTAAGATGCTAATTGATGCAGAACCTTGTGCATTGAAATCTCCAAAATTCCGCCATGACAAAGACACAAAAGCCCTTCTCTGA 2925 0.3993 MAKSPCLLPFFQFLAVLFLTFYSIFQPCVSLTLETHALFQFKNHLKDSLNYLASWNESDSPCEFYGITCDQVSGRVTEISLGNKSLSGIIFPSLSVLQSLQVFSLPSNFISEKLPAEISRWTNLRVLNLSGNQLVGAIPDFSGLRNLQILDLSANYFSGSIPSWVGNLTGLISLVLGENAYNEGEIPGTLGNLKNLTWLYLGGSHLIGEIPESLYEMKALETLDISRNKISGRLSRSISKLENLYKIELFSNNLTGEVPAELANLTNLQEIDLSANNMYGRLPEEIGNMKNLVVFQLYENRFSGELPVGFADMRHLIGFSIYRNSFTGTIPENFGRFSALESIDISENQFSGDFPKFLCERSKLKFLLALQNNLSGTFPESYVTCKSLERFRISMNQLSGKIPDKVWALPYVKIIDLAYNDFTGVVPSEIGLSTSLSQIVLTKNRFSGKLPSELGKLVNLEKLYLSNNNFSGEIPPEIGSLKQLSSLHVEVNSLTGSIPPELGHCARLVDLNLAWNSLSGNIPQSISLMSSLNSLNISGNKLTGSIPDNLEAIKLSSVDFSENLLSGRIPSGLFIVGGEKAFLGNKGLCFEGNQKPSLNSDLKICAKYHGQPRVTADKFVFLFIIASIFVVILACLLLLSWKSLKRGAENNMQRQREVNQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGKVYRVELRKNRAMVAVKQLRKIDGVKILAAEMEILGKIRHRNILKLYASLLKGGSNLLVFEYMPNGNLFQALHGQIKDGKPELDWKQRYKIALGSAKGIAYLHHDCNPPVIHRDIKSSNILLDEDYEPKIADFGIARFAEKSDKQLGYSCLAGTLGYIAPELAYATDITEKSDVYSFGVVLLELVSGREPIEEDYGEAKDIVYWVLTHLNDRESILNILDERVASECVEDMMKMLKIGIKCTTKLPSVRPTMREVVKMLIDAEPCALKSPKFRHDKDTKALL 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00068 974 Gene3D Phosphorylase Kinase; domain 1 649 754 - -
Phco9g00068 974 FunFam Probable inactive receptor kinase RLK902 31 185 - -
Phco9g00068 974 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Phco9g00068 974 Gene3D Ribonuclease Inhibitor 33 141 IPR032675 -
Phco9g00068 974 SMART LRR_typ_2 265 289 IPR003591 -
Phco9g00068 974 SMART LRR_typ_2 457 481 IPR003591 -
Phco9g00068 974 SMART LRR_typ_2 144 168 IPR003591 -
Phco9g00068 974 SMART LRR_typ_2 121 143 IPR003591 -
Phco9g00068 974 SMART LRR_typ_2 529 553 IPR003591 -
Phco9g00068 974 SMART LRR_typ_2 217 241 IPR003591 -
Phco9g00068 974 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 217 952 - -
Phco9g00068 974 ProSiteProfiles Protein kinase domain profile. 680 964 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00068 974 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Phco9g00068 974 SUPERFAMILY L domain-like 58 399 - -
Phco9g00068 974 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Phco9g00068 974 SUPERFAMILY RNI-like 314 574 - -
Phco9g00068 974 ProSiteProfiles Leucine-rich repeat profile. 459 481 IPR001611 GO:0005515
Phco9g00068 974 Gene3D Ribonuclease Inhibitor 317 599 IPR032675 -
Phco9g00068 974 SUPERFAMILY Protein kinase-like (PK-like) 676 951 IPR011009 -
Phco9g00068 974 FunFam Receptor-like protein kinase HSL1 291 598 - -
Phco9g00068 974 Pfam Leucine Rich Repeat 220 241 IPR001611 GO:0005515
Phco9g00068 974 Pfam Leucine Rich Repeat 459 481 IPR001611 GO:0005515
Phco9g00068 974 Pfam Leucine Rich Repeat 123 139 IPR001611 GO:0005515
Phco9g00068 974 Pfam Protein kinase domain 682 949 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00068 974 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 755 968 - -
Phco9g00068 974 CDD STKc_IRAK 686 951 - -
Phco9g00068 974 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Phco9g00068 974 Pfam Leucine rich repeat 145 206 IPR001611 GO:0005515
Phco9g00068 974 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Phco9g00068 974 Gene3D Ribonuclease Inhibitor 142 233 IPR032675 -
Phco9g00068 974 Gene3D Ribonuclease Inhibitor 234 316 IPR032675 -
Phco9g00068 974 SMART serkin_6 680 958 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00068 974 Gene3D Transferase(Phosphotransferase) domain 1 755 966 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00068 Phco-Chr9 469501 472966 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco9g00068 Pkinase 4.2e-49 CL0016