Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00067 ATGGCAGCTTTACTCATTAATCGCTCCTTCTTCTGTCACCTCTTTCTTTTCCTTTTTTGTCTTCCACCTATAAACACACTCTCCACTGTTTCCATTTCTCAAACCCCCAATTCAAACCAAACATTTATTTGCGTCTTGCAACATCCAAATCAACAAGGACAATCAAATCTCAACTGTACCACCTTTCCTCAGGCTCAGACTCAGGCTATTACGCTTGATGTGAATCCTAATGTTACCTACTCTCAGATTGTGGGCGGCAACGGGTTTGTATGTGCGTTGGGGCCATCGTCTTCTTCCATCTCCATCATGGGCTGTTGGAGATTCTCTGCCAATGCTACTAATGTTCCCTATAAGCGCATCTACAATGGATCCCTTGTCCAAGATATTGACAGTAGCCACTCCCACGTTTGCGGTCTTGTAAATAGAGGAAATAATGACAGTAGCCTGCAGCTTGAGTGTTGGCAATGGCATGAATTCAATTCAAGCAGTGGGAGTGTGAGGAACATGTCAATGTCAAGCATTGCCGTGGGAGAGAATTTTTTGTGTGGCTTATCACCGAGGGGGGATGTTAACTGCACAGGCACGGGGAGGGTCAATAGTAGTAGAGTTGTGGTTGATGTCCCTGCGCCTGGTGGGAATTACACTTTTCTCGCAGCCGGCTTTAGGCATGCCTGTGTCCTCTCCAGTGATGGTGGTTTGGTTTGTTGGGGAGACATGGAGGGTGAGAAACCCCAAGGGAGGTTCGTTTCTTTGGCGTTGGGAGAGAACCGCAGCTGTGCCCTCGGGCACGACAGAAGAGTTGTCTGTTGGGGTTCCAATAATTTCATCATGCCGCACACCTTGCAAGACACTTTTTTTGAGTCAATTGTGGCAAAGCGAAGTGTTTTCTGTGGAGTCGTGTCTTCCAATTATTCCTTGCTCTGTTGGGGTTCTCCAGTTTTTGAGTCAGACAGCAAGGTGTTTGAAGATGTCCTCCCAGGACCTTGTAGGAACAAGTGTCCGTGTGGGCCATTGCCCAACTCTGCCAAACTATGTCAGTCTCCAGGCGTCATTTGCCAACCCTGTTCCCCTCAAGTAGTTCAATCTTCACTTTCACCTCCATCACCATCTCAATTACAGCCACCGCCACCATCAAACCACACTGGTTGGAGCAGCCAAATGGTTGCATTCCTGGTGGTTGGATGTGTGGGCTGCAGTTCCCTGTTGCTAGTCATGGCTTTCTTCCTTCACAGGTACTGCAACTCTAAACGCAGAGGAAGCCGTGTCCATGATTCTGGCCGGTTGGATGGGTCATCTCACTCTCAACCACAACCTCAGGCTGAAGCTGGATCTCGAGTTCTTCAGAAGCGCTTGAGTCACGTTATCAGCATTGGAAATGGGAGCCCTTTTGAAGAGTTTTCCCTGGAGACACTGCTTCAAGTCTCCAACAATTTCTGTGAGGACAAGAGAGTTGGGATTGGCAGCTTCGGTTCGGTGTATCATGCCACTTTGGAGGACGGGAAGCAGATTGCTATAAAAAGAGCCGAAGCCTCATCCTCCACCTACACTGTCTTGGGTGCCCAAGTGGACAAAGACAATGCGTTCATGAATGAGCTTGAGTCTCTCTCCAGACTCCACCACAAGAACCTGGTCCGGTTGGTGGGGTTCTATGAAGACACTAAAGAACGCATTTTGGTGTACGAGTACATGGACAATGGGAGCCTCAGTGACCATCTCCACAAGCTCCAAACTTCAGCTCTCATGTCATGGCCAGTGCGCATCAAGGTGGCTCTGGATGCTGCCAGAGGCATAGAGTACTTGCACCAATACGCCACTCCTCCAATCATTCACCGTGACATAAAGTCTGCCAACATATTGTTGGATGCCAAGTGGACTGCCAAAGTCTCTGATTTTGGACTCTCCCTAATGGGACCTGACCCTGAAGATGAGGAGGCCCACCTTTCGCTTCTGGCAGCTGGCACTGTTGGCTACATGGACCCTGAATACTACAGACTTCAACATTTGACCCCCAAGAGTGACGTCTATAGCTTTGGCGTGGTTTTGCTAGAGTTGCTCTCCGGCTACAAGGCCATCCATAAAAACGAGGATGGGGTACCAAGAAATGTGGTTGATTTTGTGGTGCCATTCATTGTTCAAGATGAGATTCACAGAGTGTTGGACAAAAGAGTGCCCCCTCCCACGCCGTTTGAGATAGAGGCCGTGGCGTTTGTGGGTTATTTGGCAGCAGATTGTGTGAGGCTGGAAGGTCGAGATAGACCAACCATGTCTCAAGTTGTAAATAACTTGGAAAGAGCATTGGCTGCATGTTTAGCCCAACCAATACTCTCTAGGTCCACCACTTACTCTTCATCACACTAA 2358 0.4869 MAALLINRSFFCHLFLFLFCLPPINTLSTVSISQTPNSNQTFICVLQHPNQQGQSNLNCTTFPQAQTQAITLDVNPNVTYSQIVGGNGFVCALGPSSSSISIMGCWRFSANATNVPYKRIYNGSLVQDIDSSHSHVCGLVNRGNNDSSLQLECWQWHEFNSSSGSVRNMSMSSIAVGENFLCGLSPRGDVNCTGTGRVNSSRVVVDVPAPGGNYTFLAAGFRHACVLSSDGGLVCWGDMEGEKPQGRFVSLALGENRSCALGHDRRVVCWGSNNFIMPHTLQDTFFESIVAKRSVFCGVVSSNYSLLCWGSPVFESDSKVFEDVLPGPCRNKCPCGPLPNSAKLCQSPGVICQPCSPQVVQSSLSPPSPSQLQPPPPSNHTGWSSQMVAFLVVGCVGCSSLLLVMAFFLHRYCNSKRRGSRVHDSGRLDGSSHSQPQPQAEAGSRVLQKRLSHVISIGNGSPFEEFSLETLLQVSNNFCEDKRVGIGSFGSVYHATLEDGKQIAIKRAEASSSTYTVLGAQVDKDNAFMNELESLSRLHHKNLVRLVGFYEDTKERILVYEYMDNGSLSDHLHKLQTSALMSWPVRIKVALDAARGIEYLHQYATPPIIHRDIKSANILLDAKWTAKVSDFGLSLMGPDPEDEEAHLSLLAAGTVGYMDPEYYRLQHLTPKSDVYSFGVVLLELLSGYKAIHKNEDGVPRNVVDFVVPFIVQDEIHRVLDKRVPPPTPFEIEAVAFVGYLAADCVRLEGRDRPTMSQVVNNLERALAACLAQPILSRSTTYSSSH 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00067 785 ProSitePatterns Protein kinases ATP-binding region signature. 484 506 IPR017441 GO:0005524
Phco9g00067 785 SUPERFAMILY Protein kinase-like (PK-like) 455 762 IPR011009 -
Phco9g00067 785 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 173 772 IPR044815 GO:0004674
Phco9g00067 785 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Phco9g00067 785 Gene3D Transferase(Phosphotransferase) domain 1 563 772 - -
Phco9g00067 785 SMART serkin_6 478 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00067 785 FunFam Serine/threonine-protein kinase-like protein CCR4 563 780 - -
Phco9g00067 785 SUPERFAMILY RCC1/BLIP-II 77 313 IPR009091 -
Phco9g00067 785 Pfam Regulator of chromosome condensation (RCC1) repeat 217 238 - -
Phco9g00067 785 Gene3D - 60 324 IPR009091 -
Phco9g00067 785 Pfam Protein kinase domain 480 760 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00067 785 MobiDBLite consensus disorder prediction 419 443 - -
Phco9g00067 785 ProSiteProfiles Protein kinase domain profile. 478 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00067 785 Gene3D Phosphorylase Kinase; domain 1 440 562 - -
Phco9g00067 785 CDD STKc_IRAK 484 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00067 Phco-Chr9 466189 468546 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Phco9g00067 Pkinase 3.7e-44 CL0016